Bipolaris oryzae: COCMIDRAFT_101516
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Entry
COCMIDRAFT_101516 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K10755
replication factor C subunit 2/4
Organism
bor
Bipolaris oryzae
Pathway
bor03030
DNA replication
bor03410
Base excision repair
bor03420
Nucleotide excision repair
bor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
COCMIDRAFT_101516
03410 Base excision repair
COCMIDRAFT_101516
03420 Nucleotide excision repair
COCMIDRAFT_101516
03430 Mismatch repair
COCMIDRAFT_101516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
bor03032
]
COCMIDRAFT_101516
03036 Chromosome and associated proteins [BR:
bor03036
]
COCMIDRAFT_101516
03400 DNA repair and recombination proteins [BR:
bor03400
]
COCMIDRAFT_101516
DNA replication proteins [BR:
bor03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
COCMIDRAFT_101516
DNA Replication Termination Factors
ELG1-RFC complex
COCMIDRAFT_101516
Chromosome and associated proteins [BR:
bor03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
COCMIDRAFT_101516
DNA repair and recombination proteins [BR:
bor03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
COCMIDRAFT_101516
Check point factors
HRAD17(Rad24)-RFC complex
COCMIDRAFT_101516
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_14
AAA_22
Viral_helicase1
Gp44_lid
AAA_16
nSTAND3
RuvB_N
AAA_3
DNA_pol3_delta
Rad17
Mg_chelatase
AAA_19
AAA_assoc_2
AAA_11
MeaB
AAA_24
NTPase_1
AAA_18
NB-ARC
AAA_30
Motif
Other DBs
NCBI-GeneID:
19117883
NCBI-ProteinID:
XP_007690305
JGI:
Cocmi1_101516
UniProt:
W6YUR8
LinkDB
All DBs
Position
Unknown
AA seq
353 aa
AA seq
DB search
MSKAESSKAAASNTVKPNPNAAGGANYELPWVEKYRPVYLDDVVGNTETIERLKIIAKDG
NMPHMIISGMPGIGKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKK
VTLPPGRQKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCAI
LRYARLTDAQVVRRIMQICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTFAGFGFVN
GDNVFKVVDSPHPIKVQSMIKACHEQRIDDALAALKELWDLGYSCHDIISTMFKVTKTID
TLSEHAKLEFIKEIGFTHMRILEGVQTLLQLSGCVARLCKINMQPQLFALPTK
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaagccgagtcgtcaaaggccgctgccagcaacactgtcaagcccaaccccaat
gccgctgggggcgcaaactacgagctgccatgggtagaaaagtaccgtcccgtctacctc
gacgatgtcgtcggcaacaccgagaccattgagcgcctcaagatcattgcaaaggatggc
aacatgccacacatgatcatatccggcatgccaggtatcggcaaaacaacctccatcctc
tgcctcgcccgccaactcctcggcgacgcctacaaagaagccgtcctcgagctcaacgcc
tccgacgagcgcggcatcgacgtcgtccgcaaccgcatcaagggcttcgcccagaaaaaa
gtcacactgccccccggcagacaaaagctagtcatcctcgacgaagcagacagcatgaca
agcggtgcccaacaggcactccgccgcaccatggaaatctacagcgcaaccacccgcttc
gccttcgcctgcaaccagtcaaacaagatcatcgagcccctccagtcccgctgcgccatc
ctccgctacgcccgcctcacagacgcacaggtcgtccgccgcatcatgcagatctgcgag
gctgaagatgtcaagtactcggacgacggcatcgccgctcttgtgttttccgcagaggga
gacatgcgtcaggcaatcaacaacttgcaatcgacttttgcgggctttggcttcgtcaac
ggcgacaatgtgttcaaggtcgtagatagtccgcatcccatcaaggtgcagtctatgatt
aaagcgtgccacgagcagcggattgacgatgcgttggccgcgctcaaggaactttgggat
ttgggttattcgtgccatgatattattagtaccatgtttaaggttacaaagacgattgat
accttgagtgagcatgcgaagctcgagtttatcaaggaaatcggcttcacacatatgcgt
atcctcgagggtgtacagacgcttctgcaactctccggctgcgttgcccgtctgtgcaag
attaatatgcagcctcaattattcgcccttcctaccaaatga
DBGET
integrated database retrieval system