Bipolaris oryzae: COCMIDRAFT_108091
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Entry
COCMIDRAFT_108091 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K03678
exosome complex component RRP45
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_108091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_108091
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
COCMIDRAFT_108091
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
19119183
NCBI-ProteinID:
XP_007692769
JGI:
Cocmi1_108091
UniProt:
W6ZAI7
LinkDB
All DBs
Position
Unknown
AA seq
291 aa
AA seq
DB search
MPREAEISLNEREFIKQALQEQIRIDRRAFDAFRPLELTFGDEYGVADVQLGKTRVIARI
SVDVTTPPPERKFDGIFQIVTEFSPMASPAFEVGRPTDAEVILSRILEKAIRRSNALDTE
SLCIIAGLKCFALRADVHIVDHDGGLIDASCIAVMAALQHFRRPDVVVEGEKATILSVRE
REPIPLSILHQPLCVTFSYFEGEIFLVDANLAEEQVRQGEVIITMNKHGEVCQIAKYGGA
TIHPLALLNCTNIAQQKVKEIGAFIQKRLEEDAKERDAGGLMAELSAENAR
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgagaagctgagatatcgctcaatgagcgtgaatttatcaaacaagcactgcaa
gagcagattcgcatcgacaggcgcgcttttgacgcttttcgcccgcttgagctcactttt
ggcgatgaatatggtgtcgccgatgtgcaactgggcaagaccagggtcattgctcgcata
tcagtagacgtaacaacaccacccccagagcgcaagttcgacggcatcttccaaatagtc
acagagttctctccaatggcgtcaccagcattcgaagttggccgacccacagatgctgaa
gtcatcctctcgcgcatactcgaaaaggccattcgtcgctccaacgctctcgatacggaa
tcgctttgcattatcgccggcttgaaatgctttgctctccgcgcagatgtacacatagtt
gatcatgatggtggcctcatcgatgcgtcctgtattgccgtcatggcagcactacagcac
tttaggagacccgatgtcgtagttgaaggcgagaaagcaaccattctcagcgtacgcgaa
cgcgaaccgatacccttgtctattcttcaccagccactctgtgtgacattctcgtatttc
gaaggggagatatttttagtggatgcaaacctggctgaagagcaagttcgacaaggagaa
gtgattattaccatgaacaaacacggagaggtttgtcagatcgccaaatatggaggggcc
actatccacccgctcgccctactaaattgcacaaacatcgcgcaacaaaaggttaaggaa
ataggcgcgttcatccagaaaaggcttgaagaagatgcgaaggaaagggatgcaggagga
ctgatggctgagctgagcgctgaaaacgccaggtga
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