Bipolaris oryzae: COCMIDRAFT_22824
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Entry
COCMIDRAFT_22824 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K18752
transportin-1
Organism
bor
Bipolaris oryzae
Pathway
bor03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
COCMIDRAFT_22824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_22824
03009 Ribosome biogenesis [BR:
bor03009
]
COCMIDRAFT_22824
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
COCMIDRAFT_22824
Ribosome biogenesis [BR:
bor03009
]
Eukaryotic type
Pre-40S particles
Export and cytoplasmic maturation factors
COCMIDRAFT_22824
Pre-60S particles
COCMIDRAFT_22824
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HEAT_EZ
HEAT
HEAT_GCN1
HEAT_2
HEAT_EF3_N
TPR_IMB1
Vac14_Fab1_bd
TOR1L1_N
TPR_IPO5
HEAT_ECM29
Cnd1
TPR_DNAAF5
HEAT_MROH2B_C
CEP104-like_TOG
IBN_N
MMS19_C
UTP20_N
PDS5
Exportin-5
Xpo1
TPR_CAND1
BRCC36_C
Motif
Other DBs
NCBI-GeneID:
19120328
NCBI-ProteinID:
XP_007683953
JGI:
Cocmi1_22824
UniProt:
W7A092
LinkDB
All DBs
Position
Unknown
AA seq
941 aa
AA seq
DB search
MAWQPQDDPLRQLVQCLSDSLSANDANARKNAGEMLKSAQTSPDIDKYLAYVFSNNQPPS
SVNMDAAQYFQARAAAAVMLKNDVKTTYKAMPDSTKDYIRSVILLGLQDPTSQIRGYAGN
VITEIVRQGGIMAWPQILSELISMVSNADGNVSTQAQEGAMGALLKICEDNRKALDKEYQ
GQKPLDFIFPKLLEITTSSQSRVRADALAAINVFVPEKPPAVVSHIDTLLQQLFQLAGDS
SEDVRKHVCRTFVHIADIAPQKIIPHMDGLVEFMITQQRTPNNPDLALDAAEFWLCASED
EKMRDHLGPYLAKIVPVLLASMVYSEDDIMRLEGEEEDYEVEDREQDIKPTFASSKAGRL
TTNANGETVPANGGQGASADDNDDDLSDGEIDDFDDDDEFGDPEEQWNLRKCSAAALDVL
ASVFHEAVFQATLPYLTDNLNHAEWPHRESAVLALGAIADGCMSVVEPHLPMLTPFLITL
LEDPKPVVRQITCWTLGRYSGWASHLDAAGKKQFFEPVMEGILMKMLDRNKRVQEAAASA
FANLEEKANTELAPYCTVIVRQFVQCFSMYKDRNMFILYDCVQTLAEHVGPELSKDELVQ
ILMPALIQRWNKVSDHSREMFPLLECLSYVATALGPKFAPYAAGIFARCIKIIHRNLEEG
VMASEINGFEPPDKDFLVTSLDLLSAIIQALNLQDSATLVTQAPTFFQLLAVCMRDPNND
VRQSAYALLGDCAIYVFQQLQPCLPDILNILIPQLDFAQVTTDGLETGYSVINNACWSVG
EIAMCHKEGMQPYIEKLLQKLGTILFDQRVPESLNENAAIALGRLGLGCAPSLAVHLAQI
APAFIRAIKNVQWTDEKCHALTGFMLIVLANPGAMEQSLLEFFSDMSMADSNVVRGPAGR
QVLETFQKVIQQYKGMISDFDAFLGGLPAEQQARFRELYSV
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcgtggcaaccgcaggacgatcctctacggcagttggtccagtgcctgagcgactcg
ctcagtgccaatgacgcaaatgcgcgaaagaatgctggagaaatgctcaaatcggcgcaa
acttcgcctgatatcgacaaatacctagcctacgtcttctccaacaaccagcccccgtcc
agcgtcaacatggatgctgcgcaatacttccaagcaagagctgccgcagccgtcatgctc
aagaacgacgtaaagacgacctataaagccatgcccgattcgaccaaagactatatacga
tccgttattcttctcggcctacaagaccccacatcgcaaataagaggatatgcaggcaac
gtcattacggaaattgtgcgccagggaggcatcatggcatggccacaaattctttcggag
ctcatcagcatggttagcaacgccgacggcaatgtctcaacacaagcgcaagaaggcgcc
atgggtgcattgttaaagatttgtgaggacaacaggaaagccctcgataaggaataccag
ggacagaagcccctcgactttatatttcccaagcttctcgaaatcactacaagctctcag
tctcgagtgcgcgctgatgcattggctgctatcaacgtgttcgtcccggaaaagccaccg
gctgttgtttcccacatcgatacactgctacaacaattatttcaattggccggcgactct
agtgaagatgtgcgcaagcacgtatgccgaacctttgttcacatcgccgatattgccccc
caaaagataataccgcacatggacggccttgtcgagttcatgatcacgcagcagcgcaca
ccaaacaacccagacttggccctggacgcagcagagttctggctatgtgctagtgaagac
gaaaagatgcgcgatcaccttggcccgtacttggccaagatagtaccggttctgcttgcg
agtatggtatacagtgaagatgacattatgcgtctcgagggtgaagaggaagactacgag
gttgaggatcgagaacaagacatcaaacctacttttgcgtcgagtaaggctggaagactc
actaccaacgcaaacggcgaaacagttcctgccaatggaggacaaggagcttcagccgac
gacaacgatgatgacctgagtgatggtgaaattgacgacttcgacgacgatgatgagttt
ggagacccagaggagcagtggaaccttcgaaaatgctctgcggcggctctcgatgtcctc
gcatcagtgttccatgaagctgtcttccaagcaactcttccttacctcacagataatctt
aatcatgctgagtggccccatcgcgaatcggcagtccttgcacttggtgctattgcagat
ggctgcatgtcggtggttgaaccgcatcttcctatgctcactccattcctcatcactctg
ctcgaggaccctaagcctgttgttcgtcagatcacatgttggactctgggacgttactcg
ggttgggcttctcacctcgacgcggctggtaagaaacagttcttcgagccggtcatggag
ggcatcttgatgaagatgcttgacaggaacaagcgtgtgcaggaagccgcagcatctgcc
tttgccaatttggaagaaaaggcaaataccgagcttgcaccatactgcactgtcattgtc
cgacagtttgtccagtgcttttccatgtacaaggacaggaacatgttcatcctctacgac
tgtgtccagacgttggccgaacatgttggacctgagctgtccaaagacgagctggttcag
atactgatgcccgctctcattcagcgctggaacaaggtgtcggaccactcgcgggaaatg
ttcccattgcttgaatgcctttcatatgttgctacagccctcgggcccaagttcgccccg
tatgcagctggtatattcgccaggtgtatcaagattattcatcgcaatcttgaagaagga
gtcatggcatctgagatcaatggctttgagcccccggacaaagatttcttagtgaccagt
ctggacctgctcagcgccatcattcaggccctgaacctccaggacagcgcgacactagtc
acacaggcgccgacattcttccaactattagctgtctgcatgagagatcccaacaacgat
gtgcgacagtcggcatatgctcttctcggagattgtgccatctatgtcttccagcaactc
cagccttgcttgcccgacatcctgaacatcctcatcccgcagctcgattttgctcaagta
acaactgatggcctggagacgggttattcggttatcaacaacgcgtgctggtctgttggc
gagattgccatgtgccacaaggaaggcatgcagccctatattgagaaactgttgcaaaaa
cttggtaccatcttgtttgaccagagggttcctgagtctctgaatgagaatgcggccatt
gctctgggccgcttaggtctcgggtgtgccccttcgctagcggtccatcttgcgcagatt
gctccggctttcatccgtgctatcaagaatgttcaatggacagacgaaaagtgccacgct
ctgactggtttcatgttgattgtgctggcgaaccctggtgccatggagcaatctctgctt
gaattcttcagcgacatgtccatggcggacagcaatgtggtccgaggccctgcaggcaga
caggttctagagacattccaaaaggtcatccagcagtacaagggcatgatttcggacttt
gacgcctttctgggcggtcttcccgcggagcaacaagcacggttccgggaactgtacagc
gtctag
DBGET
integrated database retrieval system
