Bipolaris oryzae: COCMIDRAFT_8676
Help
Entry
COCMIDRAFT_8676 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
bor
Bipolaris oryzae
Pathway
bor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCMIDRAFT_8676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bor03019
]
COCMIDRAFT_8676
Messenger RNA biogenesis [BR:
bor03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
COCMIDRAFT_8676
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_17
TPR_8
TPR_19
TPR_12
TPR_CcmH_CycH
TPR_14
TPR_11
TPR_16
ARM_TT21_5th
TPR_9
E_motif
Motif
Other DBs
NCBI-GeneID:
19126926
NCBI-ProteinID:
XP_007691839
JGI:
Cocmi1_8676
UniProt:
W6ZD10
LinkDB
All DBs
Position
Unknown
AA seq
1143 aa
AA seq
DB search
MASHADSAHDLLDLDISTLRQFIELFPNEGLSKVIIGWLSSGIAKYRLTAEGDSKEGPDL
SEGGVALTQDVPVSQEDCLVLMTEGLSEAPKSPLAHCLLGDYYLFLEEYESAVETTRKGL
KYAAAEAKKTDLSFQKTRDALSSTLATALVYYQAPRNHLEAKGIFESILKRKPQFTSALI
GIGLVLEEEEEYEKAFQFLEQALQQDPSNGRIGAESAWCQALAGDYKTGLERLQQYLDYP
QLDATKQRGRELRAQTLYRIGVCLWELDHSKAARKDRQRTYAKLLAAIKANPNYAPAYTL
LGIFYEDYNKDRKRARQCFQKAFELSPSEIVAAERLARLFANQGEWDIVEVIAQRVVDSG
KARQTPGSKRKGISWPYSALGVVQMNKQEYQKSIVSFLSALRISPDDYYSYVGLGESYHN
SGRYNSASHAFNYAENPTDGVVMKRSDEEGWFTKYMLANVNRELSEFDDALAGYEAVLAV
RPKEFGVSIALLQTLVEKAWHCVETGFFGEAADSITRGIEVADTITEYKPDAFNLWKAVG
DACSIFSWVQDKLDQCPFELVVKVLQSKSEVDLDFDAHKDIDGLGQAELASLSTNRDSIL
TKVLKAAILAQKRAIVSCAHDIHAQAVAWYNLGWTEYRAHVCLEQESGEDSKLTTYLRAA
MKCFKRAIELEAGNSEFWNSLGVITTTLSPKVAQHAFVRSLHLNERSVHTWTNLGALYLL
QNDTELAHAAFSRAQSQDPDYSLAWVGEGIIALLTGDSNEALSHFTHAFELSESSLLLTK
RQYAVSAFDFLISSPSSSSDITSLIQPLFALQQLSIQAPYDIPHRHLAALFLERVGNYDA
AVTALDMVNETVEQEYEKSESMKSLARVAQAKTDLARNLLAIGSDEMAVEDAETALDLLS
EIQSDSKQTALSKDQIAKTKLSARLTAGLAHYFYGSFDAAIAYFRRAIETTGANPDIICI
LAEVLWAKGGKNEKQVARDQLFAAIEKHDGHVGLLTLIGAMTVLDDDLETMEAIKDDLNR
MRTNKDLSDHQLARVEKVMEAISISLGGEEQELDEARRSVMLAPFKHTGWAELADATGGN
EFASTLARETAMRNAPPKGSLGAAGLAGAMNSTGDVGDAQRAIVLAPWCKDNWSGLTQCI
QSA
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcacacgcagacagcgcacatgacttgctggatctggacatctcaacattacgg
caattcatcgagctattcccgaacgagggtctatcaaaagtcatcataggctggctcagc
agtggtatagcaaaatatcggcttactgcagagggtgattcaaaagaagggccggacttg
agtgaaggcggggtagcccttacccaagatgttccagtctcacaggaagactgcctggtg
ttgatgaccgaaggtcttagcgaagctccaaagtctcccttggctcattgccttctcgga
gactattatctgttcctcgaagaatatgagagtgcagtcgagactaccaggaaaggcctc
aaatatgcggctgcggaggccaaaaagactgatttgtcgttccaaaagacacgtgatgct
ctgagcagcaccctcgccactgctttggtctactaccaagcaccaagaaaccatttggaa
gccaaaggtatcttcgaatccattttgaaacgcaaacctcagttcacctctgcgctcata
ggcattggtctggtcctagaagaagaggaagaatatgagaaggctttccagtttttagaa
caggcattgcaacaagatccttcaaatggccgtatcggtgccgaatcagcgtggtgccag
gctttggctggagattataaaactggattggaaaggctgcaacagtatctcgattacccc
caactcgatgcaaccaagcaacgtggccgtgagcttcgagcacagaccctatataggata
ggtgtttgtctatgggaactcgatcactcaaaagctgcgcgaaaagatcgacaaaggaca
tacgccaagctacttgcggctataaaagcaaatccaaattatgcccctgcatacacactc
ctcggtatattctacgaggactacaacaaagaccgtaagcgcgccaggcagtgtttccaa
aaggcttttgagttatcaccttccgagattgtggcggctgagcgattggcccgtcttttc
gccaaccaaggagaatgggacattgttgaagttatcgctcagcgagtggtagactctggt
aaggcccggcaaacacccggttcgaagcgaaagggcatcagttggccatactcagctctt
ggtgtggtccagatgaacaagcaagagtaccaaaagagtattgtatcatttctctcagca
ttgcgcatcagtccggacgactattactcctacgttggtcttggtgagagctatcataat
tctggacgatacaactcggcctctcatgctttcaactatgccgagaatcccacagatggc
gtggtaatgaagagatcagatgaggagggatggttcacaaagtacatgttggccaatgtc
aatcgcgaactaagcgaatttgacgatgccctcgctggttacgaagcagtactcgcagta
cgaccgaaggagtttggcgtatccatcgcgttactgcagacacttgttgagaaagcatgg
cattgtgtcgagactggattctttggggaggctgccgatagtataactcgaggtatcgag
gttgccgacaccatcacagaatacaagcccgacgccttcaacttgtggaaggcagtcgga
gatgcttgcagtatatttagctgggttcaagacaagcttgaccaatgtccattcgagcta
gttgtgaaggttctgcaaagcaagtcagaagtggaccttgactttgacgcgcacaaagac
attgatggacttggtcaggcagagttggcttcactttccacgaacagggattcgatcctg
acaaaagtcctcaaggccgcgattctggctcaaaagagagcaatagtaagctgtgcacac
gatatacacgcacaggcggtagcttggtacaatcttggctggactgagtacagagctcat
gtgtgcttggagcaggaatctggagaggactctaaactgacaacatatcttcgagcggcc
atgaaatgtttcaagcgtgcgattgagctcgaggcgggtaactctgagttctggaactcg
cttggtgtaatcacgacaacattaagcccaaaggtcgctcaacatgctttcgtccggtcg
ttgcatctaaacgagcgaagtgtgcacacctggaccaacctcggagcactttatctgctc
cagaatgataccgagctcgctcatgcagccttctcgagggcacagtcgcaagaccccgat
tactctttagcatgggtaggcgagggcataattgcactacttactggcgattccaacgaa
gcgctatcccactttactcacgcattcgaactctcagagtcgtcgctacttctcaccaaa
cgacagtatgcggtttcagcgtttgacttcctaatctcttccccatcgtcttcgagcgat
atcacaagcctcatacagccgctctttgcgctccaacaactgagtatacaggcgccatat
gatattccgcacagacatcttgcggcgttgttcttggagcgtgtaggcaactacgatgcg
gctgtgactgctttggacatggtcaatgagactgtcgagcaggaatacgagaagtccgag
tcgatgaagtcactagctcgggtggcccaagccaagacggatttggcccgcaatcttctc
gccattggatccgacgaaatggcagtagaggatgccgagactgctctcgatcttctttca
gagatccaaagcgattccaaacagactgctctgtccaaagaccagattgcaaagaccaaa
ctgtccgcccgtctcacagctggcctcgcacattacttctacggctcctttgacgcagcg
atagcatacttccgcagagccatagagacaactggtgcaaatcctgatatcatttgcatc
ttggccgaggttctctgggccaaaggcggtaagaacgagaagcaagtggctcgtgatcag
ctcttcgctgctattgagaaacacgacggtcatgtgggtttactgacacttatcggcgcc
atgacggttcttgatgacgacctcgaaaccatggaagccatcaaggacgacctcaatcgc
atgcgcacaaacaaggatctcagcgatcaccagctggcgcgggtggaaaaggtcatggaa
gctatatccatcagccttggtggcgaggagcaagaactcgacgaagcacgtcgaagcgtc
atgttagcacctttcaagcatacaggttgggcggagctcgcagatgccaccggcggtaat
gagtttgctagtacacttgcaagagaaacggcaatgcgtaatgcgcctcctaaaggctcg
cttggtgccgctggcttggctggtgcaatgaatagtaccggagacgttggagatgcacag
agagcgatagtgttggcgccatggtgtaaggataactggagtggactgactcaatgcatt
cagagtgcttag
DBGET
integrated database retrieval system
