Bipolaris oryzae: COCMIDRAFT_97942
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Entry
COCMIDRAFT_97942 CDS
T03125
Name
(RefSeq) hypothetical protein
KO
K12858
ATP-dependent RNA helicase DDX23/PRP28 [EC:
5.6.2.7
]
Organism
bor
Bipolaris oryzae
Pathway
bor03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bor00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
COCMIDRAFT_97942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bor03041
]
COCMIDRAFT_97942
Enzymes [BR:
bor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
COCMIDRAFT_97942
Spliceosome [BR:
bor03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
COCMIDRAFT_97942
Complex C
U5 SnRNP specific factors
COCMIDRAFT_97942
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
P-loop_SecA
ResIII
DUF2986
NUDE_C
CMS1
Motif
Other DBs
NCBI-GeneID:
19129152
NCBI-ProteinID:
XP_007688948
JGI:
Cocmi1_97942
UniProt:
W6ZLR4
LinkDB
All DBs
Position
Unknown
AA seq
707 aa
AA seq
DB search
MTPAAPSRKQPPSIDDILRAKREKEAAAAKPKFIPKAERERIALEKRKKEVEEAQKRRDA
NSNSNGNGNGNDRVWKPSQDGAPIPVGPRAMRDAPTEPSSMRDRRHGGDMAPPPLPPLSE
NRKSKRPAEDTEAAMIRQRYMGAEQNQSTFSAKKKRKRTTEKKFNFEWNEEEDTSHDYNP
IYQQKAEASFFGRGRLGGFSEEVTDKAIQRMIEAIIERDPEHGRERAQQIIDMERRRKEK
GGRAQLDKHWSEKRLENMRERDWRIFKEDFNIATKGGSIPNPMRNWDEAGLPDKLMRIVD
RVGYTEPSPIQRAAIPIALQCRDLIGVARTGSGKTAAFVLPLLAYIMELPPLTAANRHDG
PYALILAPTRELAQQIEVETRKFAAPLGFNTAVLVGGHSIEEQSFQMRDGAEIIIATPGR
LVDCIERRVLVLSQCTYVIMDEADKMIDMGFEEPVNKILEALPVNNEKPDDESAEDASVM
RRDMYRQTMMYTATMPPALERIAKKYLRRPAIVTVGNLGEATETVEQRAEFIQGEEKRKK
RLQEILTSGEFAPPIIVFVNIKRNCDAIARDIKHMGFSAATLHGSKTQEQREAALASLKS
GQTSVLVATDLAGRGIDIQDVSLVVNFNMPSSIESYTHRIGRTGRLGADKPGVAITFWGN
EDADVLYDLKQILMKSQISKVPEELRKHEAAQQKGKKRGEIMGKNIT
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgacgcctgctgctccatcacgtaagcagccgccgagtatcgatgacatcctgagggcc
aagcgggagaaggaagctgccgctgcgaaacccaaattcattcccaaggctgagcgggaa
cggatcgcgctcgaaaagcgcaagaaagaagtagaagaggcacaaaagaggagagacgcc
aacagcaacagtaacggcaacggcaacggcaacgaccgagtatggaaaccttcgcaggat
ggcgcacccataccggtgggcccacgggcgatgcgagacgcacccactgagccatcgtct
atgcgagatcgcagacatggaggtgacatggcgccaccaccactaccaccactatccgag
aaccgaaagagcaagcgaccggccgaggacacggaagccgccatgattcggcagcgatac
atgggcgcggagcagaaccagtcgacgttttcggccaagaagaagcgcaagaggacaacg
gagaagaagtttaacttcgagtggaacgaggaggaagacacaagccatgactacaacccc
atctatcagcaaaaggccgaagccagcttctttggtcggggtaggctaggtggattctct
gaagaggtcacggataaggcgatacagaggatgatcgaggccattatcgagcgggatccc
gagcacggtcgagagagggcacagcaaataatagatatggaaaggcgacggaaagaaaag
ggcggccgcgcgcaactcgacaagcactggagcgagaagaggctggagaacatgcgtgaa
cgcgattggcgcatcttcaaagaggacttcaacattgctaccaaaggaggctcaatacca
aatcccatgcgcaactgggacgaggcggggctgccagacaagctcatgcgcattgtcgac
cgagttgggtacacggagccctcgcctatccaacgtgctgctatacccattgctctgcaa
tgccgcgacctcattggcgtggccagaacaggttcaggtaaaactgccgcctttgtcctg
ccgctgctggcctacatcatggaattacctcctctgacggcggccaatcgccacgacggc
ccttatgcccttatcctggctccgacgcgtgagttggcgcagcaaatcgaggtggagacg
cgcaagtttgcagcgccactaggcttcaatactgcagtccttgttggtggtcattcgatt
gaggagcaatcgttccagatgcgtgatggcgctgaaatcatcattgcgacgcccggtcgt
ctggtagactgcattgagcgtcgcgtgctggtcctcagccaatgcacctacgtcatcatg
gacgaggcggacaagatgattgacatgggtttcgaagagccagtcaacaagattctcgag
gcgctgcccgtcaacaacgagaagcccgacgacgaaagtgctgaagatgctagtgtcatg
aggcgggacatgtaccgtcagacgatgatgtacacggccactatgccgccggcgctagaa
cggattgcgaagaagtacctgcgtcgtcctgctattgtgacggtgggcaatctgggcgag
gcgacggaaacggtggagcagcgggcagagtttatccagggagaagagaagcggaagaag
cggctacaggagattctcacgtctggcgagtttgcaccaccgattattgtctttgtcaac
atcaagcgcaactgcgatgccattgctcgtgacatcaagcacatgggattctcggcggcg
acgctgcacgggtcaaagacgcaggaacagcgtgaagcggcgcttgcgtcgctcaagtcc
ggacagacgagtgtgctggttgcgactgatttggcgggccgaggtattgacatccaggac
gtatctctggtagtcaacttcaacatgccaagcagcattgaaagctacacacaccgcatt
ggtcgtacgggtcgtctgggagcggacaagcctggtgttgcgattaccttctggggcaac
gaggacgccgacgtgctctacgacctgaagcagattctcatgaagagccagatcagcaaa
gtgccagaagagctgaggaaacacgaggcagcgcagcaaaagggcaagaagaggggcgag
attatgggcaagaacattacctag
DBGET
integrated database retrieval system
