Bacillus pacificus: LMD38_18930
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Entry
LMD38_18930 CDS
T07947
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bpac
Bacillus pacificus
Pathway
bpac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LMD38_18930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpac03019
]
LMD38_18930
03400 DNA repair and recombination proteins [BR:
bpac03400
]
LMD38_18930
Enzymes [BR:
bpac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LMD38_18930
Messenger RNA biogenesis [BR:
bpac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LMD38_18930
DNA repair and recombination proteins [BR:
bpac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LMD38_18930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HEM4
Rhodanese
Motif
Other DBs
NCBI-ProteinID:
UEP93409
LinkDB
All DBs
Position
complement(3648227..3649756)
Genome browser
AA seq
509 aa
AA seq
DB search
MKLEEYLYRWFGYSEFRPGQKGVITDLLEGKDVIAMLPTGRGKSMCYQLPGLMQEGTVLV
VSPLLSLMEDQVTQLKYVVKNRVIAFNSFRTLHEKREAMKRLASYKFIFVSPEMLQSELL
IRELKKVHISLFVVDEAHCISQWGYDFRPDYKKLNVVIENIGSPTVLALTATATKDVLRD
IAESLNLENVTQHVYSIDRPNIAMEVQFVETIEEKKEALLEQVMYLQGPGIVYCSSRAWT
ERLTEYLRGKGVTGVAFYHGGMEHEERMLIQQQFMNDQLQLVICTSAFGMGVNKSNTRYI
IHFHYPTNIASYLQEIGRAGRDGEPSIAILLCSPLDHDLPISIIEDELPSQSQIQFLFSL
LQERMFQTKELPIEEVEEICYNAARFNEQYWRFIRYHLEKLGIIQQRKLILESLSDEIMT
RLIAEVEIRLRNKYSELENMKSWIQVKECRREYLLRQFGYRKEGELKNCCDYCHITKTDY
KKRQAQQSDFDYNWETELQKLFGLEKMGE
NT seq
1530 nt
NT seq
+upstream
nt +downstream
nt
atgaaacttgaggaatatttatataggtggtttggatattctgaatttcgtccaggtcaa
aaaggggtaattacagatttattggaaggaaaagatgttatagcgatgcttccgaccgga
agagggaagtctatgtgctatcaacttccagggctcatgcaagaagggacagtacttgtt
gtatcaccattattatctttgatggaagatcaggttacacaattaaaatatgttgtgaaa
aaccgagtgatagcatttaatagttttcggacattacatgaaaaaagagaagcaatgaaa
aggttagcttcctataaatttatttttgtttcacctgagatgttgcagtcggaattgtta
ataagagaattgaagaaagttcatatttcattatttgttgtggatgaagctcattgtatt
tcgcaatggggttatgattttagaccagattataaaaaactaaatgtagttattgaaaat
atcgggtctcctacggtgctagcattaactgcaacagcgacgaaagatgtactccgagat
atagcagagagtttgaatttggagaatgtgacgcagcatgtgtattctattgatcgtcca
aatatagcaatggaagtacaatttgtggagacgatagaagagaagaaagaggcgcttttg
gaacaggtgatgtatttacaagggccggggattgtatattgttcaagcagagcatggaca
gaacgtttaacggaatatttaagaggaaaaggcgttactggtgtcgctttctatcatggt
ggtatggaacatgaagagcgcatgttaattcaacagcagtttatgaatgaccagttgcag
cttgtaatatgtacaagtgcttttggtatgggagtaaataaatcaaatacgagatatatt
attcatttccactatccgactaatatagcttcttatttacaagaaatcggaagagctgga
agagatggtgaacctagtatagctattttactatgcagtccgttagatcacgatttacca
atttcaatcattgaagatgaattgccaagccagtcacaaatacaatttttattttcttta
ctgcaggaaagaatgtttcaaacgaaagaattaccaatagaagaggtagaagaaatttgt
tataatgcagcaagatttaatgaacaatattggcgtttcatccgctatcatcttgaaaag
cttggaatcatacaacagagaaaattaatattagagagcttgtcagatgaaattatgaca
agattaatagctgaagtagaaatcaggctacgtaataaatatagtgagctagaaaacatg
aaatcatggatacaagtgaaagaatgtagacgtgaatatttgctgcgacagttcggttac
agaaaagagggcgagttaaagaattgctgcgactattgtcatattacaaaaacagattat
aaaaaaagacaagcgcaacaatcggatttcgactataattgggaaacagagttacaaaag
cttttcggtctagaaaagatgggggaatga
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