Bordetella pseudohinzii: BBN53_20635
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Entry
BBN53_20635 CDS
T04945
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bpdz
Bordetella pseudohinzii
Pathway
bpdz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpdz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBN53_20635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpdz03021
]
BBN53_20635
03400 DNA repair and recombination proteins [BR:
bpdz03400
]
BBN53_20635
Enzymes [BR:
bpdz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBN53_20635
Transcription machinery [BR:
bpdz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBN53_20635
DNA repair and recombination proteins [BR:
bpdz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBN53_20635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
BSH_YknX
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ANY18083
UniProt:
A0A0J6C573
LinkDB
All DBs
Position
complement(4446705..4450817)
Genome browser
AA seq
1370 aa
AA seq
DB search
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQAETATAERVNEGLQAAFSSI
FPIVSHNGMARLEFVSYALGEPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTIKE
VKEQEVYMGEIPLMTSTGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARV
IPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKSEG
AMMEFVPERWKGEMARFDISDRSGKVIVEKDKRINAKHLRDLANGGIQRISVPEEFLYGR
VLAKNVVDADTGEVIAHANDEITESVLAAMRAAKVLDLQALYTNDLDRGPYISQTLRTDE
TADQTAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETYDLSRVGRMKVNSRLGRGDDA
NGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKI
IDGKVSDQIDYLSAIEESHYVIAQANAALDAEGRFVDDLVACREAGETMLTSPANVHYMD
VAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGIERTVAVDSGT
TVQALRGGLVDHVDAERVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKRG
DRVAKGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSVHIE
ELTVVARDTKLGPEEITRDISNLAETQLNRLDESGIVYIGAEVSADDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKLLVGKTVNGGPRKLAKGATVTKAYLADLDRWQWFDIR
LADEPHAVILEQAKESLEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQ
PGDKMAGRHGNKGVVSRITPVEDMPHMADGTTVDIVLNPLGVPSRMNVGQVLEVHLGWAA
KGVGQRIADLLQDERTAQVKSIRAYLEQVYNTTGTGARINELSDDEVIELASNLKKGVPF
ATPVFDGATEEEIGMMLELAYPDEVAKRMQLTPSRAQAWLFDGRTGEKFERPVTIGYMHY
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLT
VKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRSLALDMDLERN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcgtacaccgaaaaaaagcgcatccgcaaaagtttcgccaagcgtgaagac
gttcaaaacgttccttttcttctcgcgacgcaacttcaatcctacctaactttcctgcaa
gccgagaccgccacggcggaacgggtcaatgaaggcctgcaggcggcgttttcgtcgatt
ttcccgatcgttagccacaacggtatggcgcgcttggagttcgtcagctacgcgctgggc
gaaccggtgttcgatgtcaaggaatgtcagcaacgtggcctgacctatgcctcgccactg
cgcgccaaggtccgcctggtgctgctggaccgcgaagtcagcaagcccaccatcaaggaa
gtgaaggaacaggaagtctacatgggcgaaattccgctcatgaccagcaccggttccttc
gtgatcaacggcaccgagcgtgtcatcgtgtcccagctgcaccgctcgcccggcgtgttc
ttcgaacacgaccgcggcaagacccacagctcgggcaagctgctgttctcggcccgcgtg
atcccctatcgcggatcctggctggactttgaattcgatcccaaggacgtgctgttcttc
cgtgtggaccgtcgccgcaagatgcccgtgacgatcctgctgaaggccatcggcatgacc
ccggaatccatcctggcccatttcttcgacttcgataatttcgagctgaagagcgaaggc
gccatgatggaattcgtgcctgagcgttggaagggcgaaatggcccgtttcgacatcagc
gaccgttccggcaaggtgatcgtcgagaaggacaagcgcatcaacgccaagcacctgcgt
gatctcgccaacggcggcatccagcgcatctccgtgcccgaagagttcctctacggccgc
gtgcttgccaagaacgtcgtcgacgccgataccggcgaggtcatcgcgcacgccaacgac
gaaatcaccgaaagcgtgctggccgccatgcgcgccgccaaggtcctggacctgcaggcc
ctgtacaccaacgacctggatcgcggtccctacatctcgcagacgctgcgcaccgatgaa
acggccgaccagaccgctgcccgcgtggccatctatcgcatgatgcgccccggcgagccg
ccgaccgaagaagccgtcgaggccttgttccagcgtctgttctacagcgaagaaacctac
gatctgtcgcgcgtgggccgcatgaaggtcaacagccgtctgggtcgtggcgacgacgcc
aacggcccgatgacgctgaccaacgaagacatccttgaaaccatcaaggtgctggtcgag
ctgcgcaacggccgtggccagatcgacgatatcgatcacctgggcaaccgccgcgtgcgc
tgtgtcggcgaactggccgagaaccagttccgcgccggcctggtgcgtgtcgagcgcgcc
gtcaaggaacgcctgggccaggccgagaccgaaaatctcatgccgcatgacctgatcaac
tccaagccgatctcggccgccatcaaggagttcttcggttcgagccagctgtcccagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgtgtttccgccctgggc
cctggcggtctgacccgcgagcgcgccggcttcgaagtccgcgacgtgcacccgacccac
tatggccgcgtctgcccgatcgaaacgccggaaggcccgaacatcggtctgatcaactcg
atggcgctgtatgcgcgcctgaacgagtatggcttcctggagacgccgtaccgcaagatc
atcgacggcaaggtcagcgaccagatcgactatctgtcggctatcgaagaaagccactac
gtgatcgcgcaggccaacgccgcgctggacgccgaaggccgtttcgtcgacgacctggtc
gcctgccgcgaagcgggcgaaaccatgctcacctcgccggccaacgtgcactacatggac
gtggcgccgtcgcagatcgtgtcggtcgcggcctcgctgattcccttcctggagcacgat
gacgccaaccgcgcactgatgggcgccaacatgcagcgccaggccgtgccttgcctgcgt
ccggaaaagccgctggtcggcaccggtatcgagcgcaccgtcgcggtggactcgggcacg
accgtgcaggcgctgcgcggcggcctggtcgaccacgtcgacgccgagcgtgtggtgatc
cgcgtcaacgacgaagaaaacgtcgcgggcgaagtgggtgtggatatctacaacctcatc
aagtacacccgttccaaccagaacacgaacatcaaccagcgtcccatcgtcaagcgtggc
gatcgtgtcgccaagggtgacgtgctggctgacggcgcatcgacggacctgggcgaactc
gccctgggccagaacatgctgatcgccttcatgccctggaacggctacaacttcgaagac
tcgatcctgatctccgaacgtgtcgtggcggatgaccgctacacctcggtccacatcgaa
gagctgaccgtggtcgctcgcgataccaagctcggacctgaagaaatcacgcgcgatatc
agcaacctcgccgaaacccagctcaaccgcctggatgagtccggcatcgtctacatcggc
gccgaagtcagcgccgacgacgtgctggtgggcaaggtcacgcccaagggcgagacccag
ctgaccccggaagagaagctgctgcgcgccatcttcggcgaaaaggcctccgacgttaag
gacacctcgctgcgcgtgccctcgggcatgaccgggaccgtcatcgacgtgcaggtcttc
acccgcgaaggcatcgtgcgcgacaagcgcgcccagtccatcatcgacgatgaactgcgc
cgctaccgccaggacctgaacgaccagctgcgcatcgtcgagaacgaccagttcgaccgt
atcgagaagctgctggtgggcaagaccgtcaacggcggcccgcgcaagctggccaagggc
gccacggtcaccaaggcctacctggccgacctggaccgctggcaatggtttgacatccgt
ctggccgacgagccgcacgccgtcatcctggagcaggccaaggaatcgctggagcagaag
cgccaccagttcgatctcgccttcgaagaaaagcgcaagaagctcacgcagggcgacgag
ctgcccccgggcgtgctgaagatgatcaaggtctacctggccgtgaagcgtcgtctgcag
cctggcgacaagatggccggccgtcacggcaacaagggcgtggtctcgcgcatcaccccg
gtcgaagacatgccgcacatggcggatggcacgaccgtggacatcgtgctcaacccgctg
ggcgtgccgtcccggatgaacgtcggccaggtgctggaagttcacctgggctgggccgcc
aagggcgtgggccagcgcatcgccgatctgctgcaggacgagcgcaccgcccaggtcaag
agcatccgtgcctacctggagcaggtctacaacacgaccggcaccggcgcgcgcatcaat
gagctgtcggacgacgaagtcatcgaattggccagcaacctgaagaagggtgtgccgttc
gcgactccggtgttcgacggcgcgaccgaagaagaaatcggcatgatgctcgaactggcc
tatccggacgaagtcgccaagcgtatgcaactgacgccctcgcgcgcccaggcatggctg
ttcgacggccgcaccggcgagaaattcgagcgcccggtcaccatcggctacatgcactac
ctgaagctgcaccacttggtcgacgacaagatgcacgcccgttcgaccggtccgtactcc
ctggtgacccagcagccgctgggcggcaaggcgcagttcggtggccagcgcttcggtgaa
atggaagtgtgggcgctggaggcatatggcgcttcctacaccctgcaagaaatgctgacg
gtgaagtccgatgacatcaccggccgcaccaaggtttacgaaaacatcgtcaagggcgat
cacgtcatcgacgccggcatgccggaatcgttcaacgtgctggtcaaggaaatccgctcg
ctggccctggacatggatttggagcgtaactaa
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integrated database retrieval system
