Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110164363
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Entry
110164363 CDS
T05002
Name
(RefSeq) collagen alpha-1(IX) chain-like
KO
K08131
collagen type IX alpha
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec04510
Focal adhesion
bpec04512
ECM-receptor interaction
bpec04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110164363
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110164363
09142 Cell motility
04820 Cytoskeleton in muscle cells
110164363
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bpec00535
]
110164363
Proteoglycans [BR:
bpec00535
]
Extracellular matrix (ECM) proteoglycans
Others
110164363
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
110164363
NCBI-ProteinID:
XP_020785055
LinkDB
All DBs
Position
Unknown
AA seq
684 aa
AA seq
DB search
MAPSGTSLVLLLLQFVLICTAQRGPVGPRGPPGPPGPAGVPGVDGIDGDRGVDSTVDGGP
GPDGDNGKDGADGAPGLAGADGPVGPPGDPGPVGPPGPKGDPGPQGPAGEPGVGPDGLDG
IPGTDGLPGELGKVGPPGARGKRGPVGLPGPAGPRGAPGVYQGEELCPNACPSGLHGHSG
LPGMKGHKGVKGESGEPGRQGHKGEEGDQGAPGEVGAQGLPGPGGPRGYPGIMGSKGDRG
PRGKFGDLGPRGIPGAPGDPGQRGSIGETGHIGAVGDPGPAGIRGVPGPKGETGLAGPDG
REGIPGLPGSKGLPGKNGAPGDGGPQGLPGLPGAFGMKGHQGPKGGTGDPGVAGMMGSPG
KQGERGEQGEVGPPGPRGGPGERGVRGPDGPIGLPGARGPKGDPGFPGLPGPAGYRGQKG
DRGAVGLDGPKGEQGPPGEEGVAGERGDLGDEGEQGEKGSTGPPGETGNKGPEGGRGIQG
KEGKAGQPGPRGMQGDMGVPGLPGLQGPAGKTPTDEHIKQVCTRVMQEQLAQLAASLSRP
ESGIAGLPGPPGPPGPPGPTGENGFPGHTGSRGLPGLKGPPGLLGRKGPKGDQGDRGERG
PTTRGQKGVPGATGLPGEPGRAAYGTDGRDGDRGPRGAPGVAGVPGPPGPAGLPGYCEPS
QCTLPEVPSGFATKDTGTKGPSEM
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggctccgtccgggactagtctggtcctacttttactgcagtttgtactcatttgtacc
gctcagaggggtcctgttggccccagaggtcccccaggacccccaggaccggcaggagtc
cctggagtcgatggcattgatggtgacagaggagtggactccacagtagacggtgggcca
ggccccgatggtgacaatggtaaagacggagcagatggagctccaggacttgcaggagct
gatggaccagtaggacctcctggagaccccggaccagtcggacctccaggaccaaaaggg
gatcccggacctcagggacctgcaggagaaccaggagttggccctgatggacttgatggt
attccaggcacagatggactcccaggtgaactcgggaaagttggacctcctggcgccaga
ggaaagaggggaccagtgggtcttccaggtccagccgggcctcggggggctccaggagtc
taccagggagaggagctgtgtccaaatgcctgtccctctggtctgcacggacactctgga
ctgccagggatgaagggtcacaaaggggtcaagggtgaatctggtgaacctgggagacaa
ggacataagggagaggagggagaccaaggagcacccggagaagtcggagcccaaggatta
ccaggcccaggaggacctcgaggatatccaggaattatgggctccaaaggcgacagggga
ccgaggggtaaatttggagatcttggtcctcgtgggattccaggagctccaggagatccc
ggtcaaagaggatcaattggagaaacaggccacatcggagctgtgggtgaccctggtcca
gctgggatcagaggagttcctggaccaaagggagaaacaggtctcgctggtcctgatggg
agagagggaattcctggactacctggatccaagggtcttccaggaaagaatggcgctccg
ggagatggtggacctcagggacttcctggtttaccaggagcttttggcatgaaaggacac
caaggaccaaagggaggaacaggagacccaggtgtagccgggatgatggggtcaccaggg
aaacagggtgaacgaggagagcaaggagaggtcggacctcccggtcccagaggaggacca
ggtgaacgaggagtacgaggacctgatgggccaattggattaccaggagccagggggccc
aaaggagatcctgggtttccaggtttgccaggaccagccgggtacagaggacagaaagga
gatagaggagcagttggacttgatgggccaaaaggagagcagggacctccaggagaagag
ggggtggctggagagaggggagacctgggcgacgaaggtgaacaaggagagaaaggatcg
actggtcctcctggagagacgggaaacaaaggccctgaaggcggccgcggtatccagggg
aaggagggcaaagctgggcagcccggacccagaggcatgcagggagatatgggagtacca
ggcctgcctgggctacagggaccagcgggaaaaacacccacagatgagcacatcaaacaa
gtctgcacaagagtaatgcaggagcagctagcccagctggcagctagcctaagtcggcct
gagtctgggattgctggtctgcctggtccccccgggccaccaggacctccaggacccacc
ggagagaatggcttccctggacacacaggctctagagggctgcccgggctcaagggaccc
ccaggactgctcgggcgcaagggacccaaaggtgaccagggagacagaggagagaggggt
cccacaaccagaggacagaaaggggtgccaggagctacaggactcccaggggagccgggc
agagcagcgtatggtacagacggtcgtgatggcgacagaggacctcggggggctccgggt
gtcgccggggtaccaggtccccctggtcctgcaggccttcctgggtactgtgaaccctct
cagtgtactctgcccgaagtaccatcaggattcgctaccaaagacacaggaaccaagggc
cccagcgaaatgtga
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