Boleophthalmus pectinirostris (great blue-spotted mudskipper): 110168537
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Entry
110168537 CDS
T05002
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bpec
Boleophthalmus pectinirostris (great blue-spotted mudskipper)
Pathway
bpec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
110168537 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpec03019
]
110168537 (parn)
Enzymes [BR:
bpec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
110168537 (parn)
Messenger RNA biogenesis [BR:
bpec03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
110168537 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
Motif
Other DBs
NCBI-GeneID:
110168537
NCBI-ProteinID:
XP_020789632
LinkDB
All DBs
Position
Unknown
AA seq
680 aa
AA seq
DB search
MELTRRNFKESLDTVYGAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYAKLKKH
SMDFLLFQFGLCTFKYDQSQSKYITKPFNFYIFPKPFNRSSPDIKFICQSSSIDFLASQG
FDFNKVFCHGIPYLNQEEEVQLREQTEERRNQHANGVGTPSFISPSAKSPAHVPDEHKEF
INRVVQKVEALLSNSDKSLDLDPCTGFQRKLIYQTLNWKFPKGLHIETVETEKKERFIQV
SKVDEEERKRREQQKAEKEQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEDLQEFKEVTMCVFPRLLDTKLMSSTQPFKELITNTSLAELEKQLKESPFKCPQVE
TAEGFPSYDTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKGHISARSKLIEPFYNK
LFLMRIIDIPYLNMTGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDTSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYADYVQAKQQEKDKHKQSQAHGSWGDGWTKSHY
PSSTSSSLSYARAMRKRSMSPVQPEQARAQGDGWAHYSYAEVAGGKKLKTDGESNSEAVE
STTTEGWLKTGDMSESSGSSPDQDQSQGPDQEQSSPEAVDTEGTGGWQQATGAHKKGHKH
KKKSAGTASSSALFEVPEVW
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atggagctgacacgcaggaattttaaggagagcctggacacggtgtacggggccatagaa
gaggcagattttctggccatcgatggggaattttcaggcatcagtgacggtccaaacgtg
agcgcgctgacaaatggactggacacacctgaggagcgctacgccaagctcaagaagcat
tctatggacttcctcctctttcagtttgggctatgtacattcaaatatgatcagtcacag
tcaaagtacatcacaaagccttttaatttttatatattccccaagcccttcaacagatcc
tctccggacatcaagttcatctgccagagttccagtatagacttcttggcgagtcagggt
tttgactttaacaaagtcttctgccacggaatcccctacctgaaccaggaggaggaggta
cagctgagggagcagacggaggagaggaggaaccagcacgccaacggtgtggggacgcca
tctttcatctctccctccgccaagagccccgcccacgtgcctgacgagcacaaggagttc
atcaacagggtggtacaaaaggtggaggccctcctcagtaactcagacaaatctctggac
ttggatccgtgcacagggttccagagaaagctcatctaccagacactgaactggaagttt
cctaaagggcttcatatagaaacggtggaaactgaaaagaaggaacgcttcatccaagtg
agtaaagtggatgaggaggagaggaagagacgagagcagcagaaggcggagaaggagcag
gaggagttgaatgacgcagtgggcttctctagagtgatccatgccatctctaaatctggc
aaactggtggtgggacacaacatgctgctggacgtcatgcacaccattcaccagttctac
tgccccctgcccgaggatctgcaggagtttaaggaggtcaccatgtgtgtgtttcccaga
cttttagacacaaagctcatgtcttcaactcagccttttaaggagctcatcacaaacacg
tccctggcagagttggagaagcagctgaaggagagccccttcaaatgtccacaagtcgaa
actgcagagggttttcccagctacgacacagcccaggagcagctgcacgaggcgggctac
gacgcctacatcaccggcctctgcttcatctccatggccaactacctgggctcattcctg
acgccccctaaaggccacatctctgctcgctccaaactcatcgagcccttctacaataag
ctgttcctcatgaggatcattgacattccctacctcaacatgactggaccagacttgcaa
cccaagagggaccacgtcctgtacgtgaccttcccaaaggagtggaagaccagcgacctg
taccagctcttcagtgccttcgggaacatccaggtgtcatggattgacgacacctctgcc
tttgtgtctctgagccagacagaccaggtgcagatagcgatgaacacgagccgctacgct
gagagctacaggatccagacgtatgcagattacgtccaggcgaaacagcaggagaaggac
aagcacaaacagagccaggcccatggctcgtggggagacggctggaccaagagccactac
ccctccagcacctcctccagcctctcatacgcacgggctatgaggaagcgcagcatgagc
ccggtgcagcctgagcaggcccgagcccagggagacggctgggctcactactcctacgct
gaggtggccggaggaaagaagctcaagactgacggagagtccaactctgaggcagttgaa
agcaccaccacagaaggctggttaaaaacaggagacatgtcagagtcctccggctccagc
ccagaccaggaccagagtcagggtccagaccaagagcagagcagtccagaggctgtggac
acggagggcacaggcggctggcagcaggccaccggagcgcacaagaagggacacaagcac
aagaaaaagagtgcaggaacagcgtcctcatctgcgctctttgaggtgcctgaggtctgg
tag
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integrated database retrieval system
