Bathycoccus prasinos: Bathy01g00050
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Entry
Bathy01g00050 CDS
T03089
Name
(RefSeq) PAB-dependent poly(A)-specific ribonuclease subunit 2
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy01g00050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy01g00050
Enzymes [BR:
bpg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
Bathy01g00050
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
Bathy01g00050
mRNA degradation factors
3'-5' decay
Pan complex
Bathy01g00050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH_1
PAN2_N
RNase_T
UCH
WD40_CDC20-Fz
Motif
Other DBs
NCBI-GeneID:
19017741
NCBI-ProteinID:
XP_007515570
UniProt:
K8E9X3
LinkDB
All DBs
Position
1:6267..10415
Genome browser
AA seq
1382 aa
AA seq
DB search
MDALYPYGVSTTLPHHLEELGHVLAPPVTVAKFDSSEELLWTGTETGSLTLSHAPSLERH
CAIQDREYAIADVVPIGGGAISVSGNSVGYHTTGGETTLDVVTGEGRDSPYTCAAYEHGR
GHVGGKLYVGKASAGIVHFDPVSGIVIKNVKTGQGTMRMEWGTQRGLLAAGGLHGELCFR
DPRNGLREEMRIDAHQGAVCSLTCQNDITATCGFTSRGGSLVLDQFVKVYDTRFTARAIH
HLHFPAGPVAIKFNPASTGVLFMASESGFIQANDINNSAGLPYQFQVDLQGATMYSMDIS
SSGQCVSFGDTSGWVHTWCTNDSALVNYNSYETAVPVADATNFHLPDPSVAVNPYGQANN
SGGFLSMVNPNSAGMSSVGGGGGGGSSGGIPSMVGGLSTRTSAYSSNNPYHNRGLKPGEV
RRAHYYLLKSRIAPPAEAGDLERDRASKQNLPKLYQRVECNRSFKAERKFESFDFRSFNK
TCLPGLTNDLANCYVNPVLQMLHFVPELRSRVMSHTCEREFCLTCELSFLSHMLNTCPSG
SACQPLNFLRTLRQVREAAALGLIEGNGGELEARSEKSPAKRIQAFQRFILEQLHKEESS
NGGKTSISTALTSVEESFGIITQEKLRCAQCARDEKKEMRKFQIDLQYPSDRSIPRPSFV
DLLVKSMCIKQEVRAWCESHKAYTRMAQTKFAEKLPNVLSISLGMRDMLDLHWWGVKSDA
VPGSEGFSEKLHEHWLPHFMQLVPGGGTLSAKHGSEAKDFENFENGIVYELTGLVVFARK
PNDKPQHQQQQPQRDISKLEGHLVSFIKVKPPYVDTPGCFDVASPVGLTPGVSPLVFKKA
TSTNKEKNKEESSAKATIKSVTPSSSKLRSNAMEFGAEKAEPFTPKNASSKMGGGGGGSS
SGSGAEKSEWLLFNDFVVSEVSKDEVTQLYGHLKLPCLCLYTRVDKKPLNLPDSPITEAL
YRKITLGVAIPKSVPFKPFLLQGDDMPSPGYLVGIDAEFVQLVPAIMEKLADGSEVESIP
ARLGLARISVVRGQGSEKFTPIIDDYIRAVEPVNDYLTRFSGLVPGDLDPAVSSHFITQL
KHAYLKLRYLIDCGCIFVGHGLKQDFKMINIVVPPSQIIDTVELFHFKRQRKLGLKFLSK
YLLKEDIQSKTHDSIEDARTALKLYEKYEEMQMYGDFDEQLLEIYRFGKLFGFKEVDEAT
TAAADEATAGAGKKNMTTTAAKGGFDDTAANNELVHSTSMLSFGANEFLPPPSPPPPHLS
SHNVHHSSAAAVAAAAAAAAFANAAAQAQAQHQAQQQQNVLTFQPPPPPHSFAPPPPPPP
SFAPPPMPNMAPPAGANQRFAGQPQQPQQPQHNNNIPPPPSGPRFLTSQPPAKPPPLPPR
RL
NT seq
4149 nt
NT seq
+upstream
nt +downstream
nt
atggatgcgctttatccgtacggcgtttcgacaacgcttccgcaccatctagaagaactc
ggtcacgtgttggcgcccccggtaactgtggcgaaattcgactcttccgaagaattgctt
tggacgggaacggaaacgggcagtctgactctatcgcacgcaccttcgctcgaacgacac
tgtgcgattcaagatcgggaatatgcgatagcagatgtagttccaatcggtggtggcgcg
atatcagtgagcggtaatagcgtaggataccacacgacaggtggtgaaacgacgctcgac
gttgttaccggtgaaggaagagattctccttatacttgtgcggcgtacgagcacggcaga
ggacacgtcggtggaaagttatacgtaggaaaagcgagcgctggaattgtgcatttcgat
ccagttagtggcattgtcattaagaacgtgaaaactggacaaggaacgatgcgcatggag
tggggcactcaacgtggtttgctggctgctggaggtttacacggagagttatgtttccgt
gaccctcgaaatggattacgagaggaaatgcgcattgacgcgcatcagggagcggtgtgc
tccttgacgtgccagaacgatattacggcaacttgtggtttcacctcgcggggcggttct
ctcgtgctcgaccagttcgtgaaagtgtacgatacgagatttacggcgagagccatacac
catttgcacttccctgctggaccagttgcgattaaattcaatccagcgagtacgggtgtt
ttgttcatggcgagtgagagtggttttatacaagcgaacgacataaacaattcagccgga
ttaccgtatcagtttcaggtggatttgcaaggcgcaactatgtattctatggatatctca
tccagtggacagtgcgtgagctttggcgatacgtctggatgggtgcacacgtggtgcacg
aatgattctgcgctagtgaactacaactcgtacgaaactgcagtcccggttgcggacgca
accaattttcatctcccggatcccagcgttgccgtcaacccgtatggtcaagccaataac
agcggcggttttctaagtatggtgaacccaaatagcgcgggaatgagtagtgtgggtggt
ggtggtggtggtggtagtagtggcggtataccatcaatggttggtggcttgagcactcga
acgtcagcgtattctagtaataatccctaccataaccgtggcttgaaaccgggagaggtt
cggcgagcccactattacttgctcaaatcgcgaatcgcgcctcccgctgaggctggagat
ctcgaaagagatcgtgcatcgaagcaaaaccttcctaaactgtatcagcgggtagagtgt
aatcggagcttcaaagctgagcgaaagttcgaatcatttgatttcagatcgtttaacaaa
acgtgcttacctggacttacgaacgatttagccaactgttacgtgaatccagtcttacag
atgttacattttgttcccgagttgcgctcgcgggtcatgtcgcacacgtgtgaacgtgaa
ttctgtttgacgtgcgagttatcatttctgagtcatatgctgaatacgtgtccgtcgggt
tcggcgtgccaaccgttaaattttcttcgaacgcttcggcaagtacgtgaagcggctgcg
ctgggcttgatcgaaggaaacggcggtgagctcgaggctcgcagcgaaaaaagtccagca
aagagaatacaagcatttcagagatttattttggagcagttacacaaggaggaatcgtca
aacggtggtaagacgtcgatttcaacagcgttaacgagcgtggaagagtctttcggcatt
attacgcaagaaaagttgcgctgcgcgcagtgcgcacgcgatgaaaagaaggaaatgcgt
aagtttcagattgatttacaatatccaagcgaccgatctattccccgaccatcttttgtt
gacttactcgtgaaatccatgtgcattaaacaagaggttcgcgcttggtgtgagtcgcac
aaagcgtacacgcgaatggcgcaaactaaattcgcagagaaactaccaaacgtcctgtcc
atttctcttggcatgcgcgatatgctggatttgcactggtggggggtcaaatccgatgcc
gtgcctgggtcggagggattttcagaaaagttgcatgagcattggctcccgcactttatg
caactcgtcccaggaggcggcactttgagtgcaaaacatgggagcgaagcaaaggatttt
gaaaacttcgaaaatggaatcgtgtacgaactcactggattggttgtttttgcacgaaaa
ccaaacgacaagccgcaacatcaacaacagcagccccagcgcgatatttcaaagttagaa
ggtcatttagtatcatttataaaggtgaagccgccatacgtcgatacgcctggatgtttt
gacgtggcgtccccggttggactgacgccgggtgtctctccgttggtattcaaaaaggca
acgagtactaataaggaaaaaaataaggaagagtcatcggccaaagcgacaattaaaagc
gtgacgccgtcatcttctaaattgcgatcaaacgccatggaattcggcgcggagaaagca
gaaccgttcacgccgaagaacgcgtcatcgaagatgggaggcggtggaggtggtagcagt
tccgggagtggcgcagagaagagcgaatggcttctatttaatgattttgtcgtatctgaa
gtttccaaagatgaagtcacgcagctttacggacatttgaagcttccttgtctgtgtttg
tatacccgagtcgataagaaacctttaaatttgccggattcccccatcaccgaggctttg
taccgaaaaattacgcttggcgtcgcgattccgaagtccgtgccgttcaaaccatttttg
ctacaaggagatgatatgccttcgcctggttatttggtcggtatcgacgcagaatttgtt
cagctggttccggcaatcatggaaaaattagcagacggttctgaggttgaatcgatcccg
gcgcgtttgggtcttgcgcggatttcggtcgtacgtggacaaggttcagagaagtttaca
ccaattatcgacgactacatacgcgcagtggagcctgtaaacgactatttgacgcgcttt
tctggattagtaccaggtgatcttgatcccgctgtcagttcacacttcatcacccagctg
aagcacgcgtacttgaaactgcgctatctgattgattgtggatgtattttcgtcggacac
ggtttgaagcaagactttaagatgatcaatatagttgtccctccttctcaaatcatcgat
accgtggaattgtttcattttaagcgccaacgtaagctcggtttgaagtttttatcgaaa
tatctgttaaaggaagacattcaatcgaagacgcacgattccatcgaagatgcgagaact
gcgctgaaactatatgagaaatatgaagagatgcaaatgtatggcgatttcgacgagcag
cttttggaaatttacagatttggcaaattgtttggctttaaagaagtggacgaggccacg
acagcagcggcggatgaggccaccgcaggtgctgggaagaagaatatgacgacgacggct
gcgaaaggtggttttgacgatacagccgcgaacaacgagctcgtacactccacgtctatg
ttatcgttcggtgcgaacgagttcctcccacctccttctccaccccctcctcatctttct
tctcataacgtgcatcattcttctgctgcagcggtagcagcagcggcggcggcagcagcg
tttgcgaatgctgcggcgcaagcgcaagcgcaacaccaagcgcagcagcagcagaacgtg
ctcacatttcagcccccacctccgccacattcatttgcgccacctccacctccacctcca
tcgtttgcaccaccacctatgccaaacatggcacctccagctggagcgaatcaaaggttt
gctgggcagccgcagcagccgcagcagccgcaacataacaacaacataccaccacctccg
tccggaccgcgttttcttacgtcgcagcctccggcgaaaccgccaccacttcctccgaga
cgtttgtaa
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