Bathycoccus prasinos: Bathy16g01540
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Entry
Bathy16g01540 CDS
T03089
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
bpg
Bathycoccus prasinos
Pathway
bpg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bpg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bathy16g01540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bpg03019
]
Bathy16g01540
Messenger RNA biogenesis [BR:
bpg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
Bathy16g01540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_8
TPR_1
TPR_12
TPR_16
TPR_14
TPR_19
TPR_6
TPR_11
SHNi-TPR
DUF4116
TPR_9
TPR_20
Motif
Other DBs
NCBI-GeneID:
19011264
NCBI-ProteinID:
XP_007508525
UniProt:
K8EPF2
LinkDB
All DBs
Position
16:297406..301764
Genome browser
AA seq
1452 aa
AA seq
DB search
MKAKDFARAVQLYEDDEKDDTYEVHVYAGKSYFELKQHAKSRECYVKAARIDSEREQAHK
GIVEVGFDGDDDDVKFVEEEVIPSVTFLLQKASETEDVEKQKQYLGKLGDGYARCGEHLY
LEAAKAYRDLDDLMLKENDASSVGGAAAACSIKAAKCAVLFTEGKAKLSASKAVADAKSK
MIVSRKDEIRIAKEASIECFASLAIETIPFLDGYFRTKAKPKKGDDKVETSSDDVKDIEK
FAIKLARARLDCGAKNVEENGKKDALKFADAMLHDFMSSKSSESVVVDETNVLALALDVV
AFTGEYLGDEEEGWNDDSSSEESPLETAIKEYVKDADVENPLWVLFTAWTANQNHSRGSF
HRSCLGNDLECHHEGTRVELGSRDAKMDKEVYRLFDAMERSIDADGESDEVLSSTSYSTL
QLAMVSMLLAESRAYLGDALGALDVAGRDAVCSVLGLAKTQKRAQLLLAESHAKLGRPFD
YDAIVKASPARGCRIRAYYIAITSVARDAKAQKLKWLRSAYEAAPRSPRCAFEFAWASGN
VDACEQIVYSWIDAHEGAELPADVTARWASRRASLATSEEQLDILCSRDDRSIFTLAAKA
AKASSGANPFRALAFSALSLCVDASGDTARASKLREKALALDPSDEISGPIETNSSSPER
CREVCENAIKWNPNCIWASERLASDRDPHVALSALKILIRTKRESVAMWTNMGDCYRKLD
RKSAAVDALEKAVTLYKQRDPVADASLRDALYAATVAGNISLQLGNLERAELSYKIAHDI
FLNASSTGSSDKGGVLVPILIGLARCFVLDASGSAMRGATARCEQSAKECVAYGEKALVA
INNDAAVLATSSNTKKYAVVERVVRTLLGEAHLLMNNFDSAASEFKKCVELFPELASTRE
NLARALLLFASSLPRGDDDATSKAKSACIDYASAEGSDFSAAWRALAKIPRGKDEEDDAS
YFGRVETCLSRAVSLGVSQNKATVWASLAQLYKTAADARRQKSSGAEDIIEELERAAATC
LDKARTLNPHEGVAWIHTGEEILSKSVFGEDEGNSSVYYEKAAKAFDVATKCAFEDAEHA
RIADAKFSATAAVAVLSEDIHNTHRYENIAAAIRAARARTNDPVAHWSLAMVCERRGLID
MAKEAFENALDGVLNGDTSTLDFTFGYGESDECRNAITDACKEGLERLEKRRAMTSAAQN
DLNDGACATYASLKRRLQNAIREDPSNVHARVHLAQLLLAREEDDDDETFLALNVVSEPR
APFLNNAGGKGDFREQSSVARSVAWSCIANSPAYVYPVKSDDIESDKTRSEVLFRRANRM
AAIATVLNPGDARNQDVLQTCLNRLQLRPRASGRVSSFNLDDEKMLRDLSKMAESDPRSN
AETIASARLALAAKLAQSEEKEKRKEAKKHATRVSQTNSKTELDEQEREINNIKISERLV
RASGCFLAGSEL
NT seq
4359 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgaaggactttgcgagggcggtccaactgtacgaagacgacgagaaagacgat
acatacgaggttcacgtgtacgccgggaagagttacttcgaactcaaacaacacgcgaag
agtcgagagtgttacgtcaaggctgctcgaatcgactcggagagagagcaagcgcacaaa
gggatcgtggaggttggatttgatggcgacgacgacgacgtgaaattcgttgaggaagag
gtcattccgtcggttacgtttttactccaaaaagcgtccgaaacagaggacgtggagaag
caaaagcagtacttgggaaagttgggcgacgggtacgcgaggtgcggggaacatttgtat
ttggaagcggccaaggcgtatcgagatttagatgatttgatgttgaaagagaacgacgct
tcttcggtaggcggcgcggcagctgcgtgtagcattaaagcggcgaaatgcgcggtgctg
tttacggaaggaaaagcgaagttgagcgcgagcaaagccgtcgccgatgcgaaatctaaa
atgatcgtctcgagaaaagacgagattcggattgctaaggaggcgtcgatcgagtgtttt
gcgagtctggcgatagagacgattccgtttttggacgggtactttcgtacgaaagcaaag
ccgaagaaaggagacgacaaagtagaaacgagcagcgacgatgtgaaagatatcgaaaag
tttgccataaagctcgcgcgcgctcgattggactgtggcgccaaaaatgttgaagaaaat
ggtaagaaggatgcgttgaaattcgcagacgcgatgttgcatgatttcatgagcagcaaa
agttctgagagtgtggtcgtcgatgaaacaaacgttttggcgctcgctttagacgtcgtc
gcttttacgggggaataccttggcgacgaagaggaaggttggaacgatgattcgtcatca
gaagaatctcccctcgaaaccgcgataaaagaatacgtaaaagacgcagacgtcgaaaat
ccgctttgggtgttgttcacggcgtggactgcaaatcaaaatcacagtcgagggtcgttc
catcgttcgtgtcttgggaacgatctcgagtgtcaccatgaagggacgagagttgaatta
ggctcgagggatgcaaagatggacaaagaggtatacagattgtttgacgctatggaacgc
tccattgatgcggacggcgagagcgatgaagttctatcttcgacttcgtattccacttta
caactcgccatggtttcgatgctcttggcagagtctcgtgcgtatctcggcgacgcttta
ggcgcgctcgacgttgctggacgcgatgcggtttgctcggttttgggattagcaaaaacg
caaaaaagagcacaattactactcgctgaatcacacgccaagcttgggcgaccgtttgat
tacgacgcgatcgttaaagcatcgccggcgagaggttgtcgcattcgcgcgtattatatt
gccattacgagcgttgcccgggatgccaaggcgcaaaaactgaaatggttacgaagcgcg
tacgaagcagcgcctcggagtccaaggtgtgcgtttgagtttgcgtgggcatccggaaac
gtcgatgcgtgcgaacagattgtttattcatggatagatgcgcacgaaggagcggagcta
cccgcggatgtcaccgcgcgttgggcatcgcgtagagcgtctttggccacctcagaggag
caactcgacattttatgctcgcgcgacgatcgatcgatttttactttagcggctaaagcg
gcaaaagcaagtagcggtgcaaatccattccgtgcactcgcgtttagcgctctctctctc
tgtgtggatgcatccggcgacaccgctcgcgcctcgaaattgcgcgaaaaagctttagcg
ttggatccgagcgacgagatttcaggaccaattgaaacgaactcctcttctcctgaaaga
tgtcgagaagtttgtgaaaacgccataaagtggaatccaaactgtatatgggcatctgaa
cgacttgcgagcgatagggatccacacgtggcgctttcggcgttgaaaattctgattcgc
acgaaacgcgagagtgtcgcgatgtggacgaatatgggcgattgttatcgaaagttggat
agaaagtcagcggcggtcgatgcgttggaaaaagctgttacgttgtataagcaacgagac
ccggttgccgatgcgagtcttagagacgctttatacgccgcgacagttgcaggtaacatt
tcgttacagctcggaaatctcgagcgcgcggagttgtcgtacaaaatcgcgcacgacatt
ttcctcaacgcttcttccacgggtagcagcgataaaggaggtgttctcgttccaatccta
attggacttgcgagatgtttcgtgttggacgcgtcgggatcagccatgcgcggcgcgacg
gcaagatgtgagcaaagtgcgaaagagtgtgtcgcgtacggcgagaaagcgctcgtcgcg
atcaacaatgacgcagcggttttagcgacatcatcaaatacaaagaagtatgccgtcgtc
gaacgcgtcgttcgaacgcttttaggcgaagcgcacttattgatgaacaatttcgactca
gccgcgagtgaattcaaaaagtgtgtggaacttttcccggagcttgcgtcgacgcgagaa
aatctcgctcgggcgttgttgttgttcgcttcttctttaccacgaggtgacgatgatgct
acttcgaaagcaaaatcggcgtgcatcgattacgcgagcgcggaaggctccgatttctcc
gccgcctggcgcgcactcgctaagattcctcgagggaaagatgaagaagacgacgcttcg
tattttggtcgcgtcgaaacgtgtttgtcccgcgcggtatctttaggcgtctcgcagaac
aaagcgactgtctgggcatctctcgcgcagttatacaaaactgccgcagatgctcgacga
caaaaaagtagtggtgcggaagatatcatcgaagaactcgaacgcgccgccgcgacgtgt
ctcgataaagcccgcactctgaatccgcacgaaggtgtcgcgtggattcacactggcgaa
gagattttgagcaaaagcgtttttggcgaagacgaaggaaatagtagtgtttattacgag
aaagccgcgaaagcgttcgatgtcgccacaaagtgtgcgtttgaagacgcagagcacgcg
cgcatcgccgacgccaagttttcggcgacggcggcagttgccgtcctttcggaagatatt
cacaacacacacagatacgagaatatcgcagccgcaattcgagcggcgagagcgcgaacg
aacgatccggtcgcacactggtcgctcgcgatggtgtgcgaacgaagaggattgattgat
atggcaaaagaggcgtttgaaaacgcattggacggtgttcttaatggtgatacttcgact
ctagatttcacgttcggttacggcgagagcgatgagtgtcgaaacgcaataactgatgcc
tgcaaggaaggtttagagcgtctggaaaagaggcgagcaatgacgagtgccgcgcaaaat
gatctcaatgatggagcttgcgcgacgtacgcgtcgctcaagcgacgtttgcaaaacgcc
attcgcgaagacccttctaacgtccacgcgagagtgcatctcgcgcagttactgttagca
cgagaagaagatgatgacgacgaaacttttctcgctttgaacgtggtatccgaaccgaga
gcaccttttcttaacaacgcgggaggtaaaggtgatttccgagaacaaagttccgtcgca
cgaagcgtcgcgtggtcttgcatcgccaactctccagcatacgtgtatcccgtaaaaagt
gatgatattgaaagcgataaaacaagatcagaagttctttttcgtcgcgcaaatcgcatg
gctgccattgctacggttctaaacccgggtgacgcgcgaaaccaagatgtccttcagacg
tgcttgaatcgccttcagttgcgtcctcgagcgagcggtcgagtatcgtctttcaacctc
gatgacgaaaagatgcttcgcgatttgtcgaaaatggcagaatctgatccaaggagcaat
gcagaaactattgcttctgccagactcgcgttggcggcaaaactcgcgcagtccgaggaa
aaagagaaacgcaaagaggcaaagaaacacgcgactcgcgtaagtcaaacgaatagcaaa
acagaattagacgaacaagaacgagaaattaacaacattaaaattagcgaacgattagtg
cgagcgagcggatgtttcctcgctggcagcgaattatag
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integrated database retrieval system
