Brachyspira pilosicoli B2904: B2904_orf2412
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Entry
B2904_orf2412 CDS
T02225
Name
(GenBank) DNA directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bpj
Brachyspira pilosicoli B2904
Pathway
bpj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
B2904_orf2412
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpj03021
]
B2904_orf2412
03400 DNA repair and recombination proteins [BR:
bpj03400
]
B2904_orf2412
Enzymes [BR:
bpj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
B2904_orf2412
Transcription machinery [BR:
bpj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
B2904_orf2412
DNA repair and recombination proteins [BR:
bpj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
B2904_orf2412
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AFR71739
UniProt:
J9UX21
LinkDB
All DBs
Position
complement(2481879..2485403)
Genome browser
AA seq
1174 aa
AA seq
DB search
MSNNIQIDNKVYKERGVEFAKKYRMENGRVNFSRSASVIEPPDLLAIQKESYESFLQKDV
PENKRKNEGLQEVLTSIFPIVATNEKMQIEFISYSIGEPKISEKEARRRDKTYAYQFKIK
VQLTVRDPERIIEQEIFVGEIPAMTDRGTFIINGAERVVVSQIHRSPGVVFNRSDRDAMF
VAKIIPDRGTWLEFELDTKKDIMYVRIDRKKKLPVTVFLRAIGITTNEEILKLFYEIDKI
SLAKLSDEEKKAALIGRRSYSTVFDKENPEEIILNPGELINQNLAERLLMSGIDEIEVLN
MEAIKDNVTIINTLDKDTTKNQKEACTKIYNVIRPGEPALIENVVKTCNDLVFDPKLYAL
GDVGRYKINKRLNFPESEQDKVLRHKDIIETIRFLIKVFINEEQLDDIDHLGNRRIRSVG
ELLAMQIKTGFTRMERAAKERMQMQDMEAVTPQSLVSIKVIQAVIKEFYGTSQLSQFMDQ
NNPLSEITHKRRLNALGPGGLTRDRAGFEVRDVHHTHYGKICPIETPEGPNIGLIVSLAT
YAKINKHGFLETPYRKVVNGKVTDEIEYLTAHDEERYHIADANAPLNEDGTFKENLISTR
YRSEFPYSTPDQVQYMDVSPQQIVSLSSSLIPFLEHDDANRALMGSNMQRQSVPLLFPES
PIVGTGVEAKICQPGTGIAVHAKRAGKVIKVVHDEIVIKPTKQNSDDDYDVYELIKYQRT
NQDTNYHQRPVVNVGDTVKAGGLLADGPATDHGELALGRNVLAAFMIFEGYNFEDAILLS
KRLVQEDVFTSIHIEEFSVEARETKLDKENITRDIPNVPDSAFKNLDERGIVRIGAKVKA
GDILVGKVTPKGETEVTPEYRLLHSIFGEKSRDVKDTSLRVPHGKDGTVIDVRVYSRENG
DELKPGVEEVVKVFLAKKRIIQEGDKMAGRHGNKGVVARIMPIEDMPYLEDGTPVDICLN
PLGVPSRMNIGQVIEMLLGWTGHKMGLKYACPVFEGPKEDELKEAMISAGLNPTGKVKLF
DGRTGEPFKNDVAVGYMYMLKLNHLVEDKVHARSTGPYSLVTQQPLGGKSQFGGQRLGEM
EVWALEAYGAANMLQEFLTVKSDDMTGRARIYESIVKADVISSPGIPESFNVLVQELRGL
GLNITIHDEEGNQLPSTEKELKKKLKNKLRFLNN
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtctaataacattcagatagataataaagtatataaggaacgcggagtagaattcgca
aaaaaatacagaatggagaatggccgtgtaaacttttcacgttcggcttctgtgatagag
cctccagatctcctcgctatacaaaaagaatcttatgaaagcttccttcagaaagatgtt
cctgaaaataaaagaaaaaatgaaggcttacaagaggttttaacttctatattccctata
gtggcaactaatgaaaaaatgcaaatagagtttatttcttattctataggcgagcctaaa
atatctgaaaaagaagctagaagaagagataaaacttatgcttatcaattcaaaataaaa
gtacaattaactgtaagagacccagaaagaataatagaacaagaaatatttgttggtgaa
atacctgctatgacagatagaggtacattcattattaacggtgctgagagggttgttgtt
tctcagattcataggtctcctggtgttgtatttaaccgcagtgatagagatgctatgttt
gtagctaagattattccagataggggtacttggctcgagtttgaacttgataccaaaaaa
gatataatgtatgtaagaattgacagaaagaaaaaacttcctgttacagtatttttaaga
gctattggtatcacaactaatgaagaaattttaaaattattctatgaaatagataaaata
tctttggctaaactttctgatgaagagaaaaaagcagcacttataggaagacgttcatat
tcaacagtatttgataaagaaaacccagaagaaatcatcttaaacccaggcgagcttatt
aaccaaaacttggcagaaagacttttaatgagcggtatagatgaaattgaagtattaaat
atggaagcaataaaagacaatgttactataattaatactctagataaagacactacaaaa
aatcagaaagaagcttgtacaaagatttataatgtaataagaccgggcgaacctgcttta
atagagaacgttgtaaaaacttgtaatgatttagtatttgaccctaaactttatgcttta
ggtgatgttggacgttacaaaataaacaagagattaaacttcccagaaagtgagcaggat
aaggttttaagacataaagatataatagagacaattcgctttttaataaaagttttcata
aatgaagagcaattagatgatatagaccatttaggcaacagacgtataagaagcgttggt
gaattattggctatgcagataaaaacaggctttacaagaatggagagagcagctaaagag
agaatgcaaatgcaagacatggaagctgtaactcctcaatcacttgtaagcataaaagta
atacaagcagtaattaaagagttttatggtacaagccaattatctcagttcatggaccaa
aacaatccattatcagagattacacacaaaagaagattaaacgctttaggtcctggaggt
cttacaagagatagggctggttttgaggttcgtgacgtacaccatactcactacggtaaa
atatgtcctattgaaactcctgaaggtccaaacatcggtcttatagtttcacttgctact
tatgctaaaataaataaacatggattcttagagactccatatagaaaagttgttaatggt
aaagtaactgatgagatagaatacttaacagctcatgatgaagagcgttatcatattgct
gatgctaatgctcctttaaatgaagatggaacattcaaagaaaatcttatttctacaaga
tacagaagtgaattcccatattctacaccagatcaagtacagtatatggatgtttcacct
cagcagattgtttcactttcaagctcacttattccattcttagagcatgatgacgctaac
agagctttgatgggttcaaacatgcaacgtcaaagtgtacctcttttattcccagaatca
cctatagttggtactggagtagaagcaaaaatctgtcagcctggcacaggaatagcagtt
catgcaaaaagagctggtaaggttataaaagtagttcatgatgaaatagttattaaacct
actaaacaaaacagtgatgatgattatgatgtttatgaacttataaaatatcaaagaact
aaccaagatactaattatcatcaaagacctgtagttaatgttggtgatactgttaaagct
ggtggtcttttagctgacggtcctgctactgatcatggtgaattagcacttggaagaaac
gttttagcagcattcatgatttttgaaggttacaacttcgaggacgctattcttttaagc
aaaagattagtacaagaagatgtatttacttcaattcacatagaagagttttcagttgaa
gctcgtgagacaaaattagataaagaaaatattactagagatataccaaatgtaccagat
tctgcattcaaaaatcttgatgagagaggtattgtaagaataggtgctaaagtaaaagct
ggagatatattagttggtaaagtaactcctaaaggtgaaacagaggttactccagaatat
agacttcttcattcaatatttggtgagaagtcaagagatgtaaaagatacttctttaaga
gttcctcatggtaaagacggtactgttatagatgtaagagtttacagcagagaaaatggc
gatgaattaaagcctggagttgaggaagtagtaaaagtattcttagctaagaagcgtata
atacaagaaggcgacaaaatggctggtcgtcacggtaacaaaggggttgttgctagaata
atgcctatagaggatatgccttatttagaggacggtactcctgtagatatttgtttgaac
cctcttggtgtaccttctcgtatgaacattggtcaggtaattgagatgttgctcggttgg
actggtcataagatgggcttaaaatatgcttgtcctgtatttgaaggtcctaaagaagat
gagttaaaagaggctatgatatcagctggtttaaatcctactggtaaagtaaaactcttt
gacggcagaacaggagagcctttcaaaaatgatgtagcagtaggatacatgtatatgctt
aaacttaaccacttggttgaagataaggttcacgctagaagtactggtccttactcactt
gttactcagcagcctttgggcggtaaatcacaattcggcggtcagcgtttaggagagatg
gaagtttgggcattagaggcttatggagctgctaatatgcttcaagagttcttaactgtt
aaatctgatgatatgacaggtcgtgcaagaatatatgaatctattgttaaagctgatgtt
atatcttctccaggtatacctgaaagctttaacgtattggttcaagagcttagaggtttg
ggtcttaatatcactattcatgatgaagagggcaatcagcttccttctactgaaaaagaa
ttaaagaaaaaactaaaaaacaaactaagatttttaaataattag
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