Burkholderia pseudomallei NCTC 13179: BBK_1653
Help
Entry
BBK_1653 CDS
T02894
Symbol
rpoB
Name
(GenBank) rpoB: DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bpk
Burkholderia pseudomallei NCTC 13179
Pathway
bpk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bpk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BBK_1653 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bpk03021
]
BBK_1653 (rpoB)
03400 DNA repair and recombination proteins [BR:
bpk03400
]
BBK_1653 (rpoB)
Enzymes [BR:
bpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BBK_1653 (rpoB)
Transcription machinery [BR:
bpk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BBK_1653 (rpoB)
DNA repair and recombination proteins [BR:
bpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BBK_1653 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
UbiD
BSH_YknX
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
AGZ28788
LinkDB
All DBs
Position
1:1925900..1930006
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRSIVHQVPFLLATQLESFSTFLQADVPTAQRKSEGLQAAFTSV
FPIVSHNGFARLEFVSYALSSPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMDE
GAQMEFVPERLRGEVARFDITDREGKVIVQKDKRINAKHIRDLEAAKTKYISVPEDYLLG
RVLAKNVVDGDTGEVIANANDEITEGVLEKLREAKIKEIQTLYTNDLDQGPYISSTLRVD
ETVDKTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI
TGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYMIAQANAAIGDDGALVDELVSSREAGETMMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTVAVDSGT
TVQALRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG
DKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIR
LADDEAAVQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPVEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLARQTKIEELRVFLTKIYNESGRAEDLESFSDDEILELAKNLREGVPFAT
PVFDGATEEEMSKMLDLAFPDDIAEQLDMNPSKNQVRLYDGRTGEPFERRVTVGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgcattcgcaagagtttcgcgaagcgttccatc
gttcaccaagtgcctttcctgctggccacccagcttgaatcattcagcacatttctgcaa
gccgatgtgcccaccgcgcaacgcaagtccgaggggttgcaggccgccttcacgtcggtg
tttcccatcgtctcgcataacggcttcgctcgtctcgagttcgtgagctatgcgttgtcg
tcgccggcgttcaacatcaaggaatgtcagcagcgcggcctgacctactgctcggcgctg
cgcgcgaaggtgcgcctcgtgctcctcgacaaggagtcgccgagcaagcccgtcgtcaag
gaagtgaaggaacaggaagtgtacatgggcgagattccgctcatgacgccgaccggttcg
ttcgtcatcaacggcaccgagcgcgtgatcgtgtcgcagttgcaccgttcgcccggcgtg
ttcttcgagcacgacaagggcaagacgcacagctcgggcaagctgctgttctccgcgcgg
atcattccgtaccgcggctcgtggctcgacttcgaattcgatccgaaggacgtgctgtat
ttccgcgtcgaccgccgccgcaagatgccggtcacgatcctgctgaaggcgatcggcctc
acgcctgagcagatcctcgcgaacttcttcgtcttcgacaacttcacgctgatggacgaa
ggcgcgcagatggagttcgtgcccgagcgtctgcgcggcgaagtcgcgcgcttcgacatc
accgatcgcgaaggcaaggtcatcgtccagaaggacaagcggatcaacgcgaagcacatt
cgcgatctcgaagccgcgaagaccaagtacatctcggtgcccgaagactatctgctcggc
cgcgtgctggcgaagaacgtcgtcgacggcgacacgggtgaagtgatcgcgaacgcgaac
gacgagatcaccgaaggcgtgctcgagaagctgcgcgaagcgaagatcaaggaaatccag
acgctctacacgaacgatctggaccagggcccgtacatctcgtcgacgctgcgcgtggac
gaaaccgtcgacaagacggccgcgcgcatcgcgatctaccggatgatgcgcccgggcgag
ccgccgacggaagaagccgtcgaggcgcttttcaaccgcctgttctacagcgaagacgcg
tacgacctgtcgaaggtcggccgcatgaagttcaaccgccgcgtcggccgtgacgagatc
acgggcccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtcgacgacatcgaccacctcggcaaccgtcgcgtgcgc
tgcgtcggcgaactggcggaaaaccagttccgcgcgggcctggtgcgcgtcgagcgcgcg
gtgaaggaacgtctcggccaggccgagagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcgattcgcgagttcttcggttcgtcgcagctgtcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgcgtgtccgcactgggc
ccgggcggtctcacgcgcgagcgcgccggcttcgaagtccgcgacgtgcacccgacccac
tacggccgcgtgtgtccgatcgagacgccggaaggtccgaacatcggcctcatcaactcg
ctcgcactgtacgcgcacctgaacgaatacggcttcctcgagacgccgtaccgcaaggtc
gtcgacagcaaggtgaccgaccagatcgactatctgtcggcgatcgaggaaggccgctac
atgatcgcgcaggcgaacgccgcgatcggcgacgacggcgcgctcgtcgacgaactggtg
tcgtcgcgcgaagccggcgaaacgatgatggtcacgccggaccgcatccagtacatggac
gtcgcgccgtcgcagatcgtgtcggtggcagcctcgctgattccgttcctcgagcacgat
gacgcgaaccgcgcgctgatgggctcgaacatgcagcgtcaggccgtgccgtgtctgcgt
ccggagaagcccgtcgtcggtaccggcatcgagcgcaccgtggcggtcgactcgggcacg
acggtgcaggcgctgcgcggcggcgtcgtcgattacgtcgacgcgggccgtatcgtcatt
cgcgtgaacgatgacgaagcggttgcgggcgaagtcggcgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaatcagcgtccgatcgtgaagatgggc
gacaaggtctcgcgcggcgacgtgctggccgatggcgcatcgaccgacctgggcgagctc
gcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggagcgcgtcgtcgcggacgatcgctacacgtcgatccacatcgaa
gagctgaacgtcgtcgcacgcgacacgaagctcgggccggaagaaatcacgcgcgacatc
tcgaacctcgcggaagtccagctcggccgtctcgacgaatcgggcatcgtgtacatcggt
gcggaagtcgaagcgggcgacgtgctggtcgggaaggtcacgccgaagggcgagacccag
ctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcgtcggacgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggcaccgtgatcgacgtccaggtgttc
acgcgcgaaggtatccagcgtgacaagcgcgcgcaacagatcatcgacgacgaactgaag
cgctaccgtctggacttgaacgaccagttgcgcatcgtcgaaggcgacgcattccagcgt
ctcgcgcgcatgctcgtcggcaaggtcgcgaatggcggtccgaagaagctcgcgaagggc
acgaagatcgaccaggcgtacctggaggatctcgaccactaccactggttcgacatccgc
ctcgcggacgacgaagcggccgtgcagctcgaagcgatcaagaactcgatcgaagagaag
cgccaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctcgcggtgaagcgccgcctgcag
cctggcgacaagatggcgggccgtcacggtaacaagggtgtcgtgtcgaagatcgttccg
gtcgaagacatgccgtacatggccgacggccgtccggccgacgtcgtgctgaatccgctc
ggcgtgccgtcgcggatgaacgtggggcaggtcctggaagtgcacctcggctgggccgcg
aagggcctcggctggcgtatcggcgagatgctcgcgcgtcagacgaagatcgaagagctg
cgtgtgttcctgacgaagatctacaacgagtcgggccgtgcggaagacctcgagagcttc
agcgacgacgaaatcctcgaactcgcgaagaatctgcgcgaaggcgtgccgttcgcgacg
ccggtgttcgacggtgcgaccgaggaagaaatgtcgaagatgctcgacctcgcgttcccg
gacgacatcgccgaacagctcgacatgaatccgtcgaagaaccaggtgcgcctgtacgac
ggccgcacgggcgagccgttcgagcgccgcgtgacggtgggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgacgggcccgtactcgctcgtc
acgcagcagccgctcggcggcaaggcgcagttcggcggccagcgcttcggtgaaatggaa
gtgtgggcgctcgaagcgtatggcgcttcgtacgtgctgcaggaaatgctgacggtgaag
tcggacgacgtgaccggccggaccaaggtttatgaaaacctggtcaagggcgaccatgtc
atcgacgccggcatgcccgagtcgttcaacgtgttggtgaaggaaatccggtcgctcggt
atcgacatcgacctggaccggaactaa
DBGET
integrated database retrieval system
