KEGG   Bombus pyrosoma: 122576204
Entry
122576204         CDS       T07776                                 
Name
(RefSeq) 5'-3' exoribonuclease 1
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
bpyo  Bombus pyrosoma
Pathway
bpyo03008  Ribosome biogenesis in eukaryotes
bpyo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bpyo00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    122576204
  09123 Folding, sorting and degradation
   03018 RNA degradation
    122576204
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bpyo03019]
    122576204
   03009 Ribosome biogenesis [BR:bpyo03009]
    122576204
   03016 Transfer RNA biogenesis [BR:bpyo03016]
    122576204
   03036 Chromosome and associated proteins [BR:bpyo03036]
    122576204
Messenger RNA biogenesis [BR:bpyo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     122576204
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     122576204
Ribosome biogenesis [BR:bpyo03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    122576204
Transfer RNA biogenesis [BR:bpyo03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    122576204
Chromosome and associated proteins [BR:bpyo03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    122576204
SSDB
Motif
Pfam: XRN_N XRN_M XRN1_D2_D3 XRN1_D1 SH3_12 Dicer_dimer
Other DBs
NCBI-GeneID: 122576204
NCBI-ProteinID: XP_043602067
LinkDB
Position
LG16:3633093..3640453
AA seq 1629 aa
MGIPKFFRYISERYPCLTEKLKDYQIPEFDNLYLDVNGIIHDCSHPDDTDITFRISEETI
FKNIFRYIEVLFRMIQPQKLFFIAVDGVAPRAKINHQRSRRFKTAKDAKIQEDKAKVKGT
TLPKEKRFDSNCITPGTVFMSKLDEQLKYFITYKISTDKLWQKCKVIFSGSQVPGEGEHK
IMDYIRYMKTQANYDVNTKHCLYGLDADLIMLGLCTHEIHFTLLREELTFGKKQKKVCLT
PEETKFCLFHLSLLREYINHEFSSLKEKLPFPYNLENIIDDWILMGFLIGNDFIPHLPNL
HIVHGALSVLYQVYMDVMPTLDGYINETGTLRLDRFEKFMERLSRFDTLQFSEYYADLKY
LESKTGRPLTETENSNDKRSGSSEETRSPRKMQDKELNALLRSAADMSTGKYDDDEYGDD
KSDCEMYTMEFVQCKKDYYINKLKYENIDEHFLRSQAEGYVRAIQWNLNYYYNGCCSWSW
YYPHHYAPYISDIKDFKDLKLEFDLGEPFLPFEQLLAVLPSYSKDLLPPAFQTLLTEDQS
PIIKYYPTNFETDLNGKEQEWEAVVLIPFINEKDIVDAMAPRYSQITPEERARNRHGPMC
LFTYTEENLGAYKAPQYFPDIINHAKVQLINREDIAVPREKLVRGLCPGVKLDVYYPGFS
TLQYIEHTASLEKAKVKVLQRQSRQESMILHIKPQPNIDLTTIGLKLLGKTVYVNWPHLK
EGLVIGVSESSRKMNSVNQFDNINETEWNVWKKHITEMYKDNLGVDIGDTKFLVHIRLLV
GKKYIFNAQGKVNIEKQWTEMPTCYAYQTIVKDITTYCNNVQLYKTVSDIFEPGTVCFML
AHPYYGAMGKVHESAVCKKSGRIKVSVTTVREPSFETIKQIQADLQTQYMHGSVASQRLG
ISSLLLSRITGTIFVKQSSNELQQDDVTYNIGCNLKFNKKNEEIPGYTRKGELGQWYYSP
KALDLIRSYMLRCPTLFERLAQNPTTCIFQEEDLFTKGSEELTDTVAWLKDQLHGIESRA
CGREIIENTIMKKLEEIVDAYLESPNSIGKIVDMQVQPYLLYTPTLHITNLPPDTKTQNQ
LLDRICCIKDNFTVPLGYKGTIIGIQKMENTSDTMYDILFDKPIIGGFSINGSSEFRAYR
LSVLDFINISYGQRIEQGKGTQMNIESTEQWKNIMAINQDAQSRTNASNVIYRNEKHLTV
EAPMSPKSWSTQKDMEEIPKNQLPHKFKQYNAQNTVNVRKSHKPIAKGVQLSQNVPRKLM
AEPTSEFQAIWNELHKKQELIKAVPQAENSLQDPSAFLKAVLKISDGNSQESVHPGVSKT
TKSLNNSQEEKKALDTPPLVQQMFDHARQNDKAPTWYCSQLLNYYQLSGVGMPRYSYFGV
GDSNLIQAHILLPDKRIFVGDPCANHEQAAGSAAKKVYTELKLANLLPNMKIPLPPPQHW
YSNLQNSNWPQNIRPPPVPYYPPEPKLLQLFPEWVQKDYHRVPGLQETPKHNKHQYKHHI
QSKVEQTHNQKEPKAETKKCTAFVPLQAQKKSRHITAKQAVNKDSANQSAKDKPQPTVQQ
KEKESPAKTIKVEAVSTTLEKQKPVQNSSHQVQNAQTVIKPKKSRVAAKFCISTQIEESI
NHSKNQNSD
NT seq 4890 nt   +upstreamnt  +downstreamnt
atgggtataccgaagttctttcgatacataagcgaaagatacccttgtcttactgaaaaa
ttgaaggactaccaaatacctgaatttgataatttatatttagatgtgaatggtattata
catgattgctcacatccggacgatacggatattacatttcgtatttcagaagagaccata
ttcaaaaatatatttcgttacatagaagtattgtttcgcatgatccagcctcagaagtta
ttttttatagcagttgatggtgtggcaccacgtgcgaaaattaatcatcaaagaagcaga
cgattcaagactgcgaaagatgcaaagattcaggaagataaagcaaaggttaagggtaca
actttacccaaagagaaaagatttgattctaactgtataactccaggaacagtttttatg
tccaaacttgatgaacaattaaagtattttattacatataagatatcaactgacaaactt
tggcaaaagtgtaaagtcatattcagtgggtcccaggttcctggagaaggagaacacaaa
ataatggactatatacgttatatgaaaacacaagcaaattatgatgtaaatacaaaacat
tgtttatatggtttagatgcagatttaataatgttaggtttatgcacacatgaaatacat
tttacattattgagggaagaattgacatttggtaaaaaacaaaaaaaagtttgtttaacg
ccagaagagacaaaattttgtctgtttcatttatctctgttaagagagtatataaatcat
gaattttcctcattgaaggaaaaattgccttttccatataatttggaaaatataatcgac
gactggattttaatgggatttcttataggaaatgattttataccacatctgccaaattta
catattgtacatggcgcattgtctgtattgtatcaagtatatatggatgtaatgcctaca
ttagatggttacataaatgaaacaggaacattacgattagatagatttgaaaaatttatg
gaaagacttagtcgttttgacacattgcaattttcggagtattacgcagatctaaagtat
ctcgaaagtaagacagggagacctctcactgaaactgagaactccaatgacaaaaggtca
ggaagcagtgaagagactcgttctccaaggaaaatgcaagataaggaactcaatgcttta
cttagatctgccgcggatatgtcaacaggaaagtatgatgatgatgaatacggtgatgat
aaatcagattgtgaaatgtacactatggaattcgttcaatgcaaaaaggattattatata
aataagctaaaatacgaaaatatagacgaacattttttacgttcacaagctgagggctac
gttagagcaattcaatggaatttaaattattactataacggttgttgcagctggtcgtgg
tactatccacaccattatgcaccttatatttcggatataaaagattttaaagacttgaaa
ttggaatttgatttaggggaaccatttttaccgttcgaacaattattagccgtgttgcca
tcctatagtaaagacttattaccgccagcattccaaacattgttaaccgaggatcaatct
cctataattaaatattatccgacgaattttgaaacagatttaaatggcaaggagcaggaa
tgggaagctgtagtacttattccattcataaatgagaaagatatagtagacgcaatggcg
cctcgttattcacaaataactccggaagaacgggcaagaaacaggcatggtccaatgtgt
ttgttcacttatacagaagaaaatttaggtgcttataaggcacctcaatattttcctgac
attattaatcacgcaaaagttcaactaattaatcgtgaggacattgctgtacctcgggaa
aaattagttcggggcttatgtcctggtgtaaagctggatgtatattatcctggtttttct
actctacaatatatagaacatactgcgagtttagaaaaagccaaagtaaaggtactccag
agacaatcgcgccaagaaagtatgattctgcacataaaaccacagcccaatattgactta
acaaccataggtttgaaattattaggtaaaacagtgtacgtgaattggcctcacttgaag
gaaggtttggtaattggtgtttctgaatcaagcaggaaaatgaattcggttaatcagttt
gacaacatcaatgaaacagaatggaatgtgtggaagaaacatataacagaaatgtataag
gacaatctcggagtggatatcggagatacgaagtttttagttcatatacgactattggta
ggcaaaaagtacatctttaacgctcaagggaaggtgaacatagagaaacagtggaccgaa
atgccaacttgttatgcttatcagactatagtaaaagatatcacaacctattgtaataat
gtacaattatacaagactgtcagtgatatctttgaaccaggaactgtatgtttcatgttg
gctcatccatattatggagcaatgggaaaagtacatgaatccgcggtctgtaagaagtcg
ggcagaataaaagtatctgtaacaacggtacgagagccgtcgtttgaaacaataaaacaa
attcaagcagatctccaaacccaatatatgcacggcagcgtagcttcgcaaaggttgggt
ataagctctctgcttttaagtagaattaccggcacgatttttgtaaaacaatcctcaaat
gaacttcagcaagatgatgttacatataatatcggatgtaatttaaagttcaacaaaaag
aacgaggagatacctggttacactagaaaaggggaacttggtcaatggtattacagtcct
aaagctctcgacttaatccgtagctacatgttgaggtgccccactttgtttgagcgatta
gctcaaaatccaaccacatgtatttttcaagaagaagatctatttactaaaggttctgaa
gaactaactgatacagtggcatggttgaaagatcaacttcatggaatagaaagtcgtgcc
tgtggcagggaaattatcgagaatactataatgaaaaaacttgaagaaatagtggacgcg
tatctcgagtcaccaaatagcattggaaaaattgtggacatgcaagttcaaccatattta
ctttatacacctactttgcatataacaaaccttccacctgatacaaaaacgcagaatcag
ctattggacagaatttgctgtattaaagataatttcacggtacctcttggatacaaggga
actataattggaatacaaaaaatggaaaatacgtcagatactatgtacgatattttgttc
gacaaaccaatcataggtggatttagcataaatggatcttctgaattccgcgcgtatcgt
ttatcagtccttgattttataaatatcagttatgggcagagaatagagcagggtaaagga
acgcaaatgaatatagagtccacagagcaatggaagaacatcatggccatcaatcaggac
gctcaatcgcgcacaaatgccagcaatgttatatataggaacgaaaagcatttaacggtg
gaagcaccaatgtcaccaaagtcatggtctacacaaaaggatatggaggaaatcccgaag
aatcagctgcctcataaattcaagcagtataatgcacagaacactgtgaacgttcggaaa
tctcataaaccaatagcaaaaggtgtacagctttctcaaaacgtgccaaggaagctgatg
gcagaaccgacatccgagttccaggcaatatggaatgaattgcataaaaaacaggagcta
atcaaagctgtaccacaagccgaaaattcactacaagatcctagtgctttcttaaaagca
gtgttaaaaatttccgatggaaactctcaagaatctgtccaccctggagtatctaaaaca
actaaaagtttaaataactcacaagaagaaaagaaggcattggatacaccacctttagtg
caacaaatgtttgatcatgctcgacagaacgacaaggcgccaacttggtattgctcacaa
ttactgaattactatcaactcagtggagtgggaatgcctcgatatagttattttggtgtt
ggagatagtaatttgatccaagcacatattcttttaccagataaaagaatatttgttgga
gatccttgtgcgaatcacgaacaagcagcaggaagtgctgcaaagaaagtttatacagaa
ctgaaattagctaatttattgccaaatatgaagatacctttaccgcccccgcaacattgg
tactctaatctccagaacagtaattggccacaaaatataaggccaccaccagtaccatat
taccctccagaacctaaacttcttcaacttttccctgagtgggttcaaaaggactatcat
cgcgtacctggacttcaagaaacgcccaagcataataaacatcagtataagcatcatatt
caatcaaaagtagaacaaactcataatcagaaggaaccaaaggcagagacaaagaaatgc
acagctttcgtacccttacaagcacaaaagaaaagcagacacatcacagccaaacaggct
gtaaacaaagacagtgcaaatcaaagtgccaaagataaacctcagcccacagtacaacag
aaggaaaaggaatcgccagcgaagacgataaaagtggaagctgtcagcacgactcttgag
aagcagaaaccagtgcagaatagttcacatcaagtacaaaatgcacagaccgtaataaag
cctaaaaagtcgcgagttgcggcgaaattttgcatatcaacacaaattgaagaatcgatt
aatcatagtaaaaatcaaaattcagattaa

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