Bradyrhizobium sp. BWA-3-5: RX331_20505
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Entry
RX331_20505 CDS
T11384
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
brab Bradyrhizobium sp. BWA-3-5
Pathway
brab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RX331_20505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brab03019
]
RX331_20505
03009 Ribosome biogenesis [BR:
brab03009
]
RX331_20505
Enzymes [BR:
brab01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
RX331_20505
Messenger RNA biogenesis [BR:
brab03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
RX331_20505
Ribosome biogenesis [BR:
brab03009
]
Prokaryotic type
rRNA processing factors
RX331_20505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
WOH63118
LinkDB
All DBs
Position
4244334..4247423
Genome browser
AA seq
1029 aa
AA seq
DB search
MPNKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIE
YGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERAHREAEEESENRSSHRRRSRHRNAR
RRGHGDRVQSDVIESAGQDPSQAPQPYEGEVHDHEGIYAGEAQAHDAGHGDDAPHHDHEG
HEYEAHEYTAEGHDADHPHDHHEDDAPRSNEAAERVSAAPVAEAAPESVTPIAEEAAAEQ
APAADAAQDEHHEQDQVHEHQADADEPPHVEHAGEGYAAAATDEFAPAPEGDEGHDDEDD
EDAEEEVVESVGGDDVLEEVPERPFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALT
TYLSLAGRYAVLMPNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRT
KPEIKRDFEYLIRMWETVRDMTLRSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAG
YQEARDFMKMLMPSNVRAVKQYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYVVINQTE
ALVSIDVNSGRSTREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNR
AVERRLSDCLRQDRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPQCGGSGHVRSVS
SVALQLLRGIEEILMKGATHNLVVRTRTDVALYVLNHKRGHLRDLENAFKVSLAVVADAT
VSGQQSYIIDRGEQVHTLEAAKALLAAQAAASPPQVEEAYDEDEYDIETESEVETEETEG
LAEDGAEAASGEGDGHRRRRRRRRRGRGEPREGGAPREDGDAVRASGELVEGAAVEDGEA
DEDEGDEHVGEARGDQPPGERRPRRRGRRGGRRRRGGLEDGLAGSIADELGPTSAPEATS
AVADFDGGSAEPAPSLAQTDIQPEPVAEPAPMQPASDVQPEPVASAPAPAAEETAQETER
AAARRRSTVREKVSFVTSAPAEPAPAVSQSAPEPVATPAPAPAEPAPAASDEAAPRKAGW
WSRRFGGGE
NT seq
3090 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacaagatgttgatcgacgcgacccacccggaagagacgcgggtcgttgtggtc
cgcggcaaccgcgtcgaagaatttgatttcgagaccgcccagcgcaagcagctgcgcggc
aatatctatctcgccaaggtcacgcgggtggagccgtcgctgcaagcggcgttcatcgag
tatggcggcaaccgccatggcttcctggccttcagcgaaatccatccggactactatcag
atcccggtcgccgaccgtcaggcgctgatcgaggccgacgagcgcgctcaccgcgaggcc
gaggaagagagcgagaaccgctccagccatcgtcgccgctcgcgtcaccgcaacgcccgc
cgccgcggccatggcgaccgcgtccagagcgacgtgatcgagagtgcgggccaggatccc
tcgcaggcgccccagccctatgaaggcgaggtgcatgaccacgaaggcatttatgccggt
gaggcgcaggcgcacgacgccggacatggcgatgatgcgccccatcatgaccatgaaggg
catgaatacgaggcgcatgaatacacggcggaaggccacgacgcggatcatccgcacgat
catcatgaggacgatgcgccgcgttcgaacgaggctgcggagagggtcagcgccgcacct
gtcgcggaagccgccccggaatccgtgacgccgattgccgaggaggcggcggccgagcag
gcacccgctgccgacgccgcgcaggacgagcatcatgagcaggatcaggtgcacgaacac
caggccgatgccgatgagccgccgcatgtcgagcacgccggcgaaggatatgccgcggct
gcaacggatgaattcgcccccgcgccggaaggtgacgagggccatgacgacgaggacgac
gaggacgccgaagaggaagtcgtcgaatccgtcggtggcgacgacgttctggaggaagtt
ccggagcggccgttccgtccgcgccgccagtacaagattcaggaagtcatcaagcgccgc
caggtcatgctggttcaggtcgtcaaggaagagcgcggcaacaagggcgcggcgctgacg
acctatctgtcgctggccggccgttacgccgtcttgatgcccaacaccgcccgcggcggc
ggcatcagccgcaagatcacctcggcccaggaccgctcgcggctgaaggaagtggtgcag
gacctcgatgtgcccgagggcatggggatcatcctgcgcaccgccggcgcctcgcgcacc
aagcccgagatcaagcgcgacttcgaatatctgatccggatgtgggaaacggtgcgcgac
atgacgctgcgctcgcaggcccccaccctcgtctatgaggaaggctcgctgatcaagcgc
tcgctgcgcgacctctacaataaggaaatcgacgagatccaggtcgccggtgaagccggc
taccaggaagcccgcgacttcatgaagatgctgatgccctcgaacgtgcgggcggtgaaa
cagtatcgtgacggccagccgctgttctcgcggatgggcgtcgagagccagctggacgcg
atgttctcgccgaccgtgcagctccgttccggcggctatgtcgtcatcaaccagaccgag
gcgctggtctcgatcgacgtcaactccggccgctcgacccgcgagcaccacatcgaggac
accgcgctcaagaccaatctggaggcggccgaggaagtcgcccggcaattgcgtctgcgc
gacctcgccggcctgatcgtcatcgacttcatcgacatggacgagaagcgcaacaaccgc
gcggtcgagcgcaggctctccgactgcctgcggcaggaccgcgcgcgcatccaggtcggc
cgcatctcgcatttcggcctcctggaaatgtcgcgccagcgcatccgcgccagcgtgctg
gagagctccaccgagccctgcccgcaatgcggcggctcgggccacgtgcgttcggtatcc
tcggttgcgctgcaattgctgcgcggcatcgaggaaatcctgatgaagggcgcgacccac
aatctcgtggtgcgcacccgtaccgatgtcgcgctctatgtgcttaaccacaagcgcggc
catctgcgcgatctcgagaacgccttcaaggtatcgctggccgtcgtggccgacgccacc
gtcagcggccagcagtcctacatcatcgaccgcggcgagcaggtccatacgctagaggcc
gccaaggcactgctggcagcgcaggccgccgcttccccgccgcaggtcgaggaagcctat
gatgaggacgagtacgacatcgaaaccgaatccgaggtcgagactgaggagacggagggc
ctggccgaggatggcgctgaagcggcgtccggcgaaggcgacggtcatcgccgcaggcgg
cgccgccgccgccgtggccgcggcgagccgcgcgaaggcggagccccgcgcgaggacggt
gatgcggttcgcgcgtccggcgagctggtcgaaggcgcggccgtcgaggacggtgaagcc
gacgaggacgaaggcgacgaacacgtgggcgaggcccgtggcgatcagccacccggcgag
cggcgtccgcgccgccgcggtcgccgtggcggacgccgccggcgtggcggtctggaagat
ggccttgccggatcgatcgccgacgaactcgggccgacctcggcgccggaagcaaccagc
gcggttgccgatttcgacggtggctcggccgagcccgcgccgtcgctggcacagaccgac
attcagcccgaaccggtcgccgaaccggcaccgatgcagcctgcgtccgacgtccagccg
gagccagttgccagcgcacccgccccggccgctgaagaaaccgcgcaagagaccgaacgc
gcagcggcgcggcggcgctcgaccgtgcgcgagaaggttagcttcgtgaccagcgcgccg
gccgaaccggcacccgccgtcagccagagtgcaccggagccggttgcaacgcccgcgccc
gctccggccgagccggcgccggcggcatcggacgaagcagcgccacgcaaggccggctgg
tggtcgcggcgcttcggcggcggcgagtag
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