Brevundimonas sp. DS20: JL11_12770
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Entry
JL11_12770 CDS
T04101
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
brd
Brevundimonas sp. DS20
Pathway
brd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JL11_12770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brd03021
]
JL11_12770
03400 DNA repair and recombination proteins [BR:
brd03400
]
JL11_12770
Enzymes [BR:
brd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JL11_12770
Transcription machinery [BR:
brd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JL11_12770
DNA repair and recombination proteins [BR:
brd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JL11_12770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
ALJ09112
UniProt:
A0A0P0DHW4
LinkDB
All DBs
Position
complement(2605037..2609233)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVLNIFNPVPVTPTFDQIKIALASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIDLAAPVAHIWFLKS
LPSRISLMLDMALKDVERVLYFENYIVTEPGLTPLKQNQLLTEDEFYRYQEEYGDDGFTA
EIGAEAVRNLLMGIDLNAEAEKHRAELADNPSEMKAKKASKRLKLIEAFLESGNKPEWMI
LTIVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVITVG
PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPAVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPKLIEGKAIRLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILSPANGKPIIVPSQDIVLGLYYLSLVKDGEPGEGKLFANIGEIDAALD
AKVVTLHSRIKARWTELDAEGKEVTKVIDTTPGRMKLAALLPRNPNVGYRLLEKNLTKKE
IGNLIDVVYRHCGQKATVIFADQMMGLGFREAAKAGISFGKDDIVIPAKKAELVAETRTQ
VEEYEQQYADGLITRGEKYNKVVDAWAKATDRIADAMMGEIAQPRVLIEGENPDINSVYM
MANSGARGSQAQMKQLGGMRGLMAKPSGEIIETPITSNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDSIVTEQDCGSTRGITLRAVMEGGDVLVSLGQRVLGRYA
AEDIKEPGTDTVLFPADTYLVEEVVEAIEAAGVQSVKVRSALTCEAEAGICAHCYGRDLA
RGTNVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAETSFMEATNAGTAKVTGPTV
VAAHGDLVAMSRNVIVTVVVDGKDRETHKAPYGARIRVKDGDPVKKGQRLAEWDPYTTPI
LTEVGGVVRFEDLVEGLSVKEETDEATGIAQRVVSDWRASPRGSDLRPAMGITSGDAYAK
LSSGSDARYLLPVGAVLSVANGDEVKPGEIIARVPTEGAKTRDITGGLPRVAELFEARRP
KDCAVIAEMDGRVEFGRDYKNKRRIKITPEPNADGVQGEPVEFLIPKGKHISVHDGDLIQ
KGDYIIDGNPDPHDLLRIQGVEALAEYLVNEVQEVYRLQGVPINDKHIEVIVRQMLQKVE
VIDAGETTLIRGDTVEVAEAALENAKVEKRGGRPAITQPVLLGITKASLQTRSFISAASF
QETTRVLTEASVHGKKDMLEGLKENVIVGRLIPAGTGAYLRSLQKIANERDAELTQARED
AIEPLPADLQLELESSEG
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaggaagtcctgaacatcttcaacccggtcccggtcaccccgaccttcgaccag
atcaagatcgccctggcctcgccggagaagatccggtcgtggtcgttcggtgagatcaag
aagccggaaaccatcaactaccgcacgttcaagcccgagcgtgacggcctgttctgcgcc
cgcatctttggcccgaccaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgagaagtgcggggttgaagtcaccctggcccgcgtccgtcgc
gagcggatgggccacatcgacctggccgccccggtcgcccacatctggttcctgaagtcg
ctgcccagccgcatctcgctgatgctggacatggcgctgaaggacgtcgagcgcgtcctg
tatttcgagaactacatcgtcaccgagccgggcctgaccccgttgaagcagaaccagctg
ctgacggaagacgagttctatcgctaccaggaagaatacggcgacgacggcttcaccgcc
gaaatcggcgccgaggccgtccgcaacctgctgatgggcatcgacctgaacgccgaggcc
gagaagcaccgcgccgaactggccgacaacccgtcggaaatgaaggccaagaaggcgtcc
aagcgcctgaagctgatcgaggccttcctggaatcgggcaacaagcccgagtggatgatc
ctgaccatcgtgccggtcattccgccggagctgcgtcctctggtgccgctggacggcggt
cgtttcgcgacctccgacctgaacgacctctatcgtcgcgtcatcaaccggaacaaccgt
ctgaagcgcctgatggagctgcgggctccggacatcatcatccgcaacgaaaagcggatg
ctgcaggaatcggtcgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgtccgctgaagtcgctcgccgacatgctgaagggcaagcaggggcgcttc
cgccagaacctgctcggcaagcgggtcgactattcgggccgttcggtgatcaccgtgggt
ccggagctgaagctgcacgagtgcggcctgcccaagaagatggcgctggagctgttcaag
cccttcatctacgcgcgcctggacgccaagggcctgtcgggcaccgtcaaacagtccaag
cgcatggtggagcgcgaacagcccgccgtctgggacatcctggacgaggtcatccgcgag
cacccggtgctgctgaaccgcgccccgaccctgcaccgtctgggcattcaggcgttcgag
cccaagctgatcgagggcaaggccatccgcctgcaccccctggtctgcaccgccttcaac
gccgacttcgacggcgaccagatggccgttcacgtgccgctgagcctcgaggcccagctg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgtcgcccgccaacggcaagccg
atcatcgtgccgtcgcaggacatcgtcctgggtctgtactatctgtcgctggtcaaggac
ggcgagccgggcgagggcaagctgttcgccaacatcggcgagatcgacgccgctttggac
gccaaggtcgtgaccctgcacagccgcatcaaggcgcgctggaccgagctggacgccgag
ggcaaggaggtgaccaaggtcatcgacaccacgccgggccggatgaagctggccgccctg
ctgccgcgcaacccgaacgtcggctatcgcctgctcgagaagaacctgaccaagaaggag
atcgggaacctgatcgacgtggtctatcgccactgcggtcagaaggcgacggtcatcttc
gccgaccagatgatgggtctgggcttccgcgaggccgccaaggcgggcatctcgttcggc
aaggacgacatcgtcattccggcgaagaaggccgagctggtcgccgaaacccgcacccag
gtcgaggagtacgaacaacagtacgccgacggcctgatcacgcgcggcgagaagtacaac
aaggtcgtcgacgcctgggccaaggccacggaccggatcgccgacgccatgatgggcgag
atcgcgcagccgcgcgtgctgatcgagggcgaaaaccccgacatcaactcggtctatatg
atggccaactccggcgcccgtggttcgcaggcccagatgaagcaactgggcggcatgcgc
ggcctgatggccaagccttccggcgagatcatcgagacgccgatcacctcgaacttcaag
gagggcctgaccgtccttgaatacttcaactcgacccacggcgcccgtaagggtctggcc
gacaccgcgctgaaaaccgccaactcgggttatctgacccgtcgtctggtggacgtggcg
caggactcgatcgtcaccgagcaggactgcggctcgacccggggcatcaccctgcgtgcg
gtgatggagggcggcgacgtcctggtctcgctgggacagcgcgtcctgggccgttatgcg
gccgaggacatcaaggagccgggcacggacacggtcctgttccccgccgacacctatctg
gtcgaggaagtcgtcgaggccatcgaggccgccggtgtccagtcggtgaaggtgcgttcg
gccctgacctgcgaagccgaggccggcatctgcgcccactgctacggccgtgacctggcg
cgcggcaccaacgtcaatatcggcgaagcggtcggcgttatcgccgcccagtcgatcggc
gagccgggcacccagctgaccatgcggactttccacatcggcggcacggcccaggtggcg
gaaacctccttcatggaggcgaccaacgccggtacggccaaggtcaccggcccgaccgtc
gttgcggcccacggcgacctggtggccatgagccgcaacgtcatcgtgaccgtggtcgtg
gacggcaaggaccgcgagacgcacaaggccccttacggcgcccgcatccgcgtcaaggat
ggcgatccggtcaagaagggccaacgtctggccgagtgggacccctacaccacgcccatc
ctgacggaagtcggcggcgtcgtgcgcttcgaggacctggtcgagggcctgtcggtcaag
gaagagaccgacgaagccaccggcatcgcccagcgcgtcgtcagcgactggcgggccagc
ccgcgcggctcggacctgcgtccggccatggggatcaccagcggcgacgcctacgccaag
ctgtcgtcgggctccgacgcccgctatctcctgcccgtcggcgcggttctgtccgtggcg
aacggcgacgaggtcaagccgggcgagatcatcgcccgtgttccgaccgaaggcgccaag
acccgcgacatcaccggcggtctgccgcgcgtggccgaactgttcgaagcccgccgtccg
aaggactgcgccgtcatcgccgagatggacggtcgcgtggagttcggtcgcgactacaag
aacaagcgccgcatcaagatcacgccggagcccaacgccgacggcgttcagggcgaaccc
gtcgagttcctgatcccgaagggcaagcacatctccgtccacgacggcgatctgatccag
aagggcgactacatcatcgacggcaatccggatccgcacgatctgctgcgcatccagggc
gtcgaggcgctggccgagtatctggtgaacgaagtgcaggaggtctaccgactgcagggc
gtgccgatcaacgacaagcacatcgaagtcatcgtgcgtcagatgctgcagaaggtcgag
gtgatcgacgccggtgaaaccaccctgatccgcggcgacacggtcgaggtggccgaggcg
gctctggagaacgccaaggtcgagaagcgcggcggtcgtccggccatcacccagccggtt
ctgctgggcatcaccaaggcgtcgctgcagacccgcagcttcatctcggcggcctccttc
caggagaccacgcgcgtcctcaccgaggcttcggtccacggcaagaaggacatgctggaa
ggtctgaaggagaacgtcatcgtcggccgcctgatcccggcaggcacgggcgcctatctg
cgctcgctgcagaagatcgccaacgagcgcgacgccgaactgacccaggcccgcgaagac
gcgatcgagcccctgccggccgatctgcaactggagctagagagcagcgaaggctga
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integrated database retrieval system
