KEGG   PATHWAY: breg04137
Entry
breg04137                   Pathway                                
Name
Mitophagy - animal - Balearica regulorum gibbericeps (East African grey crowned-crane)
Description
Mitochondria act as the energy powerhouse of the cell, and are essential for eukaryotic cells to grow and function normally. However, deleterious byproducts of oxidative phosphorylation process called reactive oxidative species (ROS) lead to mitochondrial dysfunction. If the damage is too excessive to be repaired, such mitochondria are selectively recognized and targeted for degradation by a specific mode of autophagy, termed mitophagy. The loss of the mitochondrial membrane potential can induce mitophagy, involving the kinase PINK1 and the E3 ligase Parkin. PINK1 serves as the sensor for the mitochondrial depolarization and recruits Parkin, followed by ubiquitin-dependent recruitment of mitophagy receptors. There are also several PINK1/Parkin-independent mitophagy pathways, in which a group of LIR-containing receptors are required in response to different stimuli. Mitophagy contributes to the maintenance of a healthy mitochondrial network and the prevention of programmed cell death.
Class
Cellular Processes; Transport and catabolism
Pathway map
breg04137  Mitophagy - animal
breg04137

Other DBs
GO: 0000422
Organism
Balearica regulorum gibbericeps (East African grey crowned-crane) [GN:breg]
Gene
104629071  FKBP8; peptidyl-prolyl cis-trans isomerase FKBP8 [KO:K09574] [EC:5.2.1.8]
104629086  EIF2AK3; eukaryotic translation initiation factor 2-alpha kinase 3 [KO:K08860] [EC:2.7.11.1]
104629536  TBK1; serine/threonine-protein kinase TBK1 [KO:K05410] [EC:2.7.11.10]
104629775  RPS27A; ubiquitin-40S ribosomal protein S27a [KO:K02977]
104629928  SAMM50; sorting and assembly machinery component 50 homolog [KO:K07277]
104630152  TBC1D15; TBC1 domain family member 15 [KO:K20168]
104630201  [KO:K03097] [EC:2.7.11.1]
104630258  SQSTM1; sequestosome-1 isoform X1 [KO:K14381]
104630321  CSNK2A2; casein kinase II subunit alpha' [KO:K03097] [EC:2.7.11.1]
104630637  RABGEF1; rab5 GDP/GTP exchange factor isoform X1 [KO:K20131]
104630816  PINK1; serine/threonine-protein kinase PINK1, mitochondrial [KO:K05688] [EC:2.7.11.1]
104630897  PHB2; prohibitin-2 [KO:K17081]
104630997  MARCH5; E3 ubiquitin-protein ligase MARCH5 [KO:K10660] [EC:2.3.2.27]
104631064  HRAS; GTPase HRas [KO:K02833]
104631204  MITF; microphthalmia-associated transcription factor isoform X1 [KO:K09455]
104631227  BNIP3L; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like [KO:K15465]
104631553  HIF1A; LOW QUALITY PROTEIN: hypoxia-inducible factor 1-alpha [KO:K08268]
104631636  UBB; polyubiquitin-B isoform X1 [KO:K08770]
104631946  SP1; transcription factor Sp1 [KO:K04684]
104631994  MFN2; mitofusin-2 [KO:K06030] [EC:3.6.5.-]
104632286  MTX2; metaxin-2 [KO:K17776]
104632814  NBR1; next to BRCA1 gene 1 protein [KO:K17987]
104633635  TAX1BP1; tax1-binding protein 1 [KO:K21347]
104633724  [KO:K04440] [EC:2.7.11.24]
104633771  RHOT1; LOW QUALITY PROTEIN: mitochondrial Rho GTPase 1 [KO:K07870] [EC:3.6.5.-]
104633789  TOMM70A; mitochondrial import receptor subunit TOM70 [KO:K17768]
104633828  BCL2L13; bcl-2-like protein 13 [KO:K15485]
104633974  CALCOCO2; calcium-binding and coiled-coil domain-containing protein 2 [KO:K21348]
104634026  RAB5A; ras-related protein Rab-5A isoform X1 [KO:K07887]
104634120  [KO:K17776]
104634279  KRAS; GTPase KRas isoform X1 [KO:K07827]
104634295  [KO:K17907]
104634320  TFEB; transcription factor EB [KO:K15590]
104635027  [KO:K07828]
104635417  MUL1; mitochondrial ubiquitin ligase activator of NFKB 1 [KO:K15688] [EC:2.3.2.27]
104635869  OPA1; dynamin-like 120 kDa protein, mitochondrial [KO:K17079] [EC:3.6.5.5]
104635941  SMURF2; E3 ubiquitin-protein ligase SMURF2 [KO:K04678] [EC:2.3.2.26]
104636005  [KO:K21343] [EC:3.4.19.12]
104636702  JUN; transcription factor AP-1 [KO:K04448]
104636785  BECN1; beclin-1 [KO:K08334]
104637526  AMFR; E3 ubiquitin-protein ligase AMFR [KO:K10636] [EC:2.3.2.36]
104637575  FUNDC1; FUN14 domain-containing protein 1 [KO:K17986]
104637886  FOXO3; forkhead box protein O3 [KO:K09408]
104638297  PGAM5; serine/threonine-protein phosphatase PGAM5, mitochondrial [KO:K15637] [EC:3.1.3.16]
104638472  MAP1LC3C; microtubule-associated proteins 1A/1B light chain 3C [KO:K10435]
104638669  RAB7A; ras-related protein Rab-7a isoform X1 [KO:K07897]
104638777  EIF2S1; eukaryotic translation initiation factor 2 subunit 1 [KO:K03237]
104638792  [KO:K10435]
104638972  BCL2L1; bcl-2-like protein 1 isoform X1 [KO:K04570]
104639461  RHOT2; mitochondrial Rho GTPase 2 [KO:K07871] [EC:3.6.5.-]
104639484  RAB7B; ras-related protein Rab-7b [KO:K07898]
104639523  OPTN; optineurin [KO:K19946]
104639568  [KO:K17985]
104639931  ARIH1; E3 ubiquitin-protein ligase ARIH1 [KO:K11968] [EC:2.3.2.31]
104640452  ULK1; LOW QUALITY PROTEIN: serine/threonine-protein kinase ULK1 [KO:K21357] [EC:2.7.11.1]
104640466  [KO:K27045]
104640890  [KO:K08341]
104641230  SMURF1; E3 ubiquitin-protein ligase SMURF1 [KO:K04678] [EC:2.3.2.26]
104641627  RAB5C; ras-related protein Rab-5C isoform X1 [KO:K07889]
104641693  MAPK8; mitogen-activated protein kinase 8 isoform X1 [KO:K04440] [EC:2.7.11.24]
104641797  RRAS2; ras-related protein R-Ras2 [KO:K07830]
104642160  SIAH1; E3 ubiquitin-protein ligase SIAH1 [KO:K04506] [EC:2.3.2.27]
104642199  ATF4; cyclic AMP-dependent transcription factor ATF-4 [KO:K04374]
104642569  [KO:K10435]
104642660  BNIP3; BCL2/adenovirus E1B 19 kDa protein-interacting protein 3 [KO:K15464]
104642808  [KO:K05410] [EC:2.7.11.10]
104643066  GABARAPL2; gamma-aminobutyric acid receptor-associated protein-like 2 [KO:K08341]
104643334  USP8; ubiquitin carboxyl-terminal hydrolase 8 isoform X1 [KO:K11839] [EC:3.4.19.12]
104643563  USP30; LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 30 [KO:K11851] [EC:3.4.19.12]
104643572  MFN1; mitofusin-1 isoform X1 [KO:K21356] [EC:3.6.5.-]
104643597  TRAF2; LOW QUALITY PROTEIN: TNF receptor-associated factor 2 [KO:K03173] [EC:2.3.2.27]
104643636  MRAS; ras-related protein M-Ras [KO:K07831]
104643693  [KO:K10435]
104643707  MAPK9; mitogen-activated protein kinase 9 isoform X1 [KO:K04440] [EC:2.7.11.24]
104643816  VCP; transitional endoplasmic reticulum ATPase [KO:K13525]
104643826  NLRX1; NLR family member X1 [KO:K12653]
104644091  TOMM20; mitochondrial import receptor subunit TOM20 homolog [KO:K17770]
Compound
C00035  GDP
C00044  GTP
Reference
  Authors
Pickrell AM, Youle RJ
  Title
The roles of PINK1, parkin, and mitochondrial fidelity in Parkinson's disease.
  Journal
Neuron 85:257-73 (2015)
DOI:10.1016/j.neuron.2014.12.007
Reference
  Authors
Durcan TM, Fon EA
  Title
The three 'P's of mitophagy: PARKIN, PINK1, and post-translational modifications.
  Journal
Genes Dev 29:989-99 (2015)
DOI:10.1101/gad.262758.115
Reference
  Authors
Shirihai OS, Song M, Dorn GW 2nd
  Title
How mitochondrial dynamism orchestrates mitophagy.
  Journal
Circ Res 116:1835-49 (2015)
DOI:10.1161/CIRCRESAHA.116.306374
Reference
  Authors
Hamacher-Brady A, Brady NR
  Title
Mitophagy programs: mechanisms and physiological implications of mitochondrial targeting by autophagy.
  Journal
Cell Mol Life Sci 73:775-95 (2016)
DOI:10.1007/s00018-015-2087-8
Reference
  Authors
Yamano K, Matsuda N, Tanaka K
  Title
The ubiquitin signal and autophagy: an orchestrated dance leading to mitochondrial degradation.
  Journal
EMBO Rep 17:300-16 (2016)
DOI:10.15252/embr.201541486
Reference
  Authors
Yamaguchi O, Murakawa T, Nishida K, Otsu K
  Title
Receptor-mediated mitophagy.
  Journal
J Mol Cell Cardiol 95:50-6 (2016)
DOI:10.1016/j.yjmcc.2016.03.010
Reference
  Authors
Roberts RF, Tang MY, Fon EA, Durcan TM
  Title
Defending the mitochondria: The pathways of mitophagy and mitochondrial-derived vesicles.
  Journal
Int J Biochem Cell Biol 79:427-436 (2016)
DOI:10.1016/j.biocel.2016.07.020
Reference
  Authors
Arena G, Valente EM
  Title
PINK1 in the limelight: multiple functions of an eclectic protein in human health and disease.
  Journal
J Pathol 241:251-263 (2017)
DOI:10.1002/path.4815
Related
pathway
breg04140  Autophagy - animal
breg04210  Apoptosis
KO pathway
ko04137   

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