Brevundimonas sp. NIBR11: KKHFBJBL_01007
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Entry
KKHFBJBL_01007 CDS
T10976
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
bren Brevundimonas sp. NIBR11
Pathway
bren03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bren00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKHFBJBL_01007 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bren03019
]
KKHFBJBL_01007 (deaD)
03009 Ribosome biogenesis [BR:
bren03009
]
KKHFBJBL_01007 (deaD)
Enzymes [BR:
bren01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KKHFBJBL_01007 (deaD)
Messenger RNA biogenesis [BR:
bren03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KKHFBJBL_01007 (deaD)
Ribosome biogenesis [BR:
bren03009
]
Prokaryotic type
rRNA helicases
KKHFBJBL_01007 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WGM30776
LinkDB
All DBs
Position
complement(1063732..1065804)
Genome browser
AA seq
690 aa
AA seq
DB search
MPFPASHPALDRALSERGYAEPTPVQAAVLEAEAGRDLLVSAQTGSGKTVAFGLALAPTL
LGDAERFTDFGNPLALVIAPTRELALQVSNELTWLYAQTDARIVSCVGGMDPKTERRALE
RGAHIVVGTPGRLRDHLERGALDLSEAKAIVLDEADEMLDMGFQEDLTFMLDAAPAERRT
LLFSATLARDIVQLAKTYQRDALRIDTVAGNKSHADIEYKAIRVAPNEVELGVVNVLRYF
EAPGALVFANTRERVKHLTASLRERGFAVVGLSGELTQSARSEALQALRDGHARVCVATD
VAARGLDLPDLGLVIHAEIPVNKAGLLHRSGRTGRAGKKGVSVLMVSYTRRRKVELMLQS
ASIVAEWSGPPSAEMIREKDRERLLADPALTAPVEDEEALELGRLLLERTTPEQVAASLI
RLYRQKLPAPEDVYDDDRMKRAQTTGVNDRGQRDGPLTDFARGGDMAWFRINIGRDKNAD
PKWLLPTLCRLGHVTKGDIGSIKIFDRETKFEITKAAEARFRAAIANGLEDGVTVNDAVA
PGPKERPASRWDKKPAGDGERPERKPWANKSEGAAAASRERPARTDKPAWKDREGGDKPA
WKSREDKPFVEKKPWAKRDDAASAEARPKWVKRTKDGPTPEGKQAWIDKPKGAKKPWTPR
PDAAPTGDKAWTGKPKGAGKPFKGKKKPNG
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgcccttccccgccagccatcccgcgctcgatcgcgccctgtccgaacgcggctatgcc
gagcccaccccggtccaagccgccgtgctggaggccgaggctggccgcgatctgctggtt
tcggcacagaccggctcgggcaagaccgtcgccttcggcctggccctcgccccgaccctg
cttggcgacgcagagcggttcaccgatttcggcaatccgctcgccctggtcatcgctccc
actcgcgagctggcgctgcaggtctcaaacgagctgacctggctctatgcccagaccgat
gcgcgcatcgtttcctgcgtcggcggcatggacccgaagaccgagcgccgggcgctggaa
cgcggcgcccatatcgtcgtcggcacgcccggccgtctgcgtgaccacctggagcgcggc
gcactggacctgtccgaagccaaggccatcgtcctcgatgaggccgacgaaatgctggac
atgggcttccaggaagacctgaccttcatgctggacgccgcgcccgccgaacgtcggacc
ctgctgttctcggccacgctcgcccgcgacatcgttcagctggctaagacctatcagcgc
gacgccctgcgtatcgacaccgtcgccggcaacaagtcgcacgccgacatcgagtacaag
gccatccgcgtcgccccgaacgaggtcgagctcggcgtcgtcaacgtcctgcgctatttc
gaggcccccggcgccctggtcttcgccaacacccgcgagcgagtgaaacacctcaccgcc
tccctgcgtgaacgcggcttcgccgtcgtaggcctgtcgggcgagctgacccagagcgcc
cgttcggaagcgcttcaggccctccgcgacggccacgcccgcgtctgcgtcgccaccgac
gtcgccgcgcgcggcctcgacctgcctgatcttggcctcgtcatccatgccgagatcccg
gtcaacaaggccggcctgctgcaccgttcgggccgcaccggccgcgcaggcaagaagggc
gtctccgtcctgatggtcagctacacccgccgccgcaaggtcgagctgatgctgcaatcg
gcctcaatcgtcgccgaatggtctggcccgccgtcggccgagatgatccgggagaaggac
cgcgaacgcctgctggccgaccccgcactgaccgcaccggtcgaggacgaggaagctctg
gaattgggccgtctgctgctggagcggacgacgcccgaacaggtcgccgcttcgctgatc
cgcctgtaccgccagaaactgccggccccggaagatgtctatgacgacgaccgcatgaag
cgcgcccagacaacgggcgtgaacgatcgcggccagcgagacggtcccctgaccgacttc
gcccgcggcggcgacatggcctggttccgcatcaacatcgggcgcgacaagaacgccgat
ccgaaatggctgctgccgacgctgtgccgcctcggccacgtcaccaagggcgacatcggc
tcgatcaagatcttcgaccgcgagaccaagttcgagatcaccaaggccgccgaggccagg
ttccgcgccgctatcgcgaacggtctggaagacggcgtgaccgtcaacgacgccgtcgct
ccgggcccgaaggaacgccccgccagccgctgggacaagaagcctgcgggcgacggtgag
cgtccggagcgcaaaccttgggcgaacaagtcggagggcgccgccgcggcgtcacgcgag
cgcccggcccgcaccgacaagccggcctggaaggatcgtgaaggcggcgacaagcccgcc
tggaaatctcgcgaggacaagcccttcgtcgagaagaagccctgggccaagcgcgacgac
gcggcctcggccgaagccaggcccaaatgggtcaagcggaccaaggacggccctacccct
gaaggcaagcaagcctggatcgacaagcccaagggcgcgaagaagccctggacgccgcgc
ccggacgccgctccgacgggcgacaaggcctggaccggcaagcccaagggcgccggcaag
ccgttcaagggcaaaaagaagccgaacgggtaa
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