Bradyrhizobium sp. SK17: CWS35_24315
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Entry
CWS35_24315 CDS
T05325
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brk
Bradyrhizobium sp. SK17
Pathway
brk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CWS35_24315 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brk03400
]
CWS35_24315 (mfd)
Enzymes [BR:
brk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CWS35_24315 (mfd)
DNA repair and recombination proteins [BR:
brk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CWS35_24315 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
SecA_DEAD
RecG_dom3_C
AAA_22
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AUC97020
UniProt:
A0A2K8YHC2
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All DBs
Position
5277509..5281027
Genome browser
AA seq
1172 aa
AA seq
DB search
MKQPMKSPAAMLAPGRVLTIANVAEGAEGLVISDLARAIAAQPKRPAVSLAVVCRDGARM
QQLARALEFFAPDIAVMQIPAWDCQPYDRVSPHSGILAQRLTALAKLSRLTGSDKPLIVL
TTVNAIVQRVPARDQVAAQALSVAPGNVVPMDSVVAWLEHNGYTRSSTVREPGEYAVRGG
ILDLFPAGLDQPVRFDFFGDSLESIRTFDAETQRTHLDMRGLDLVPVSEFQLTTETIRRF
RMGYVAAFGAPERDDQLYEAVSEGRRHPGMEHWLPLFQERMDTLFDYLDGATIAIEPQGE
DAARERFPQIADYYEARREALDQPGSGAIYKPLPPDKLYLSEPEWTKLLGDVPLARLTPF
AVPEGSSEVFDAGARQGRNFAPERADGNVNVFEAVVGHIGALQSQRKKVIVALWSEGSRD
RMGAMLRDHKLLNTTSVNTWRIVQATPRNETMLAVLGMESGFETGEFAVISEQDILGDRL
VRPRKASRKLDNFISEVTSLATGDLVVHVEHGIGRFVGLQTLEVSGAPHDCLELHYAAET
KLFLPVENIELLSRYGSDSANVELDRLGGGGWQARKAKLKNRIREIAGELIKIAAERQLH
EAPKFPLQPHVYDEFCARFPYDETEDQLGAINSTLKDLEIGRPMDRLICGDVGFGKTEVA
LRAAFAVALEGKQVAVVVPTTLLARQHSRTFTERFKGFPVNVAQASRLVSTKDLTQTKKG
LADGSVDIVVGTHALLGKAIKFKDLGLLIVDEEQHFGVSHKERLKQLRAQVHVLTLSATP
IPRTLQLALTGVRELSIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPR
IEDLAGVKDFLDKNVPEMKVAVAHGQMPPTVIEDIMSAFYDGKYDILLSTTIVESGLDIP
NANTLIVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPAQQKITAQAERRLKVLQSLET
LGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQSMLEEAIVNLKAGVAEPAADRW
SPQITIGMPVLIPEDYVNDLSVRLSLYRRLADLDTDEDIDAFAAEMRDRFGVLPDEVRYL
FKVAAIKAYCRRANVEKIDAGPKGAVITFRDNSFAHPERLVSFIRQHGQAAKVRPDMKVV
FLQQWDTPEERLAGTTEILRQLANLAESKKAA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagccgatgaaatcgccggccgcgatgctcgcgcccggccgggtgctgaccatc
gccaacgtcgccgagggcgccgaggggctcgtgatctccgatctggcgcgcgccatcgcc
gcgcagccgaagcggccggcggtgagcctcgccgtggtctgccgcgacggtgcgcggatg
cagcagctcgcccgtgcgctggagttcttcgcgcccgatattgcggtcatgcaaattccg
gcctgggactgccagccctatgatcgcgtctcgccgcattccggcatcctggcgcaacgg
ctgactgcgctcgccaagctgtcgcggctgacgggctccgacaagccgctgatcgtgctg
acgacggtgaatgccatcgtgcagcgggtcccggcgcgcgatcaggtcgcggcgcaggcg
ctgtcggtcgcgcccggcaatgtcgtgccgatggattcggtggtggcctggctggagcac
aacggctacacccgctcgtccacggtgcgcgagcccggcgagtatgccgtgcgcggcggc
atcctcgacctgtttccggccggcctcgaccagccggtgcgcttcgacttcttcggcgat
agcctggaatcgatccgcaccttcgatgccgaaacccagcgcacgcatctcgacatgcgc
gggctcgacctggtgccggtctcggaattccagctcaccaccgaaaccatccgccgtttc
cgcatgggctatgtcgcggcgttcggcgcgccggagcgcgacgaccagctctatgaggcg
gtctccgagggacggcgccatcccggcatggagcattggctgccgctgttccaggagcga
atggacacgctgttcgactatctcgacggcgcgacgatcgcgatcgagccgcagggcgag
gacgccgcgcgcgaacgcttcccccagattgccgactattacgaagcgcgccgcgaggcg
ctggaccagccgggcagtggcgcgatctacaagccgctgccgccggacaagctctatctg
tctgagcccgagtggaccaagctgctcggcgacgtgccgctggcgcggctgacgccgttc
gcagtgccggaaggcagcagcgaggtgttcgacgccggcgcgcggcagggccgcaacttc
gcgccggagcgcgccgacggcaatgtcaacgtgttcgaggccgtggtcggccatatcggc
gcgctgcaatcacagcgcaagaaggtcatcgtcgcgctgtggagcgagggctcgcgcgat
cgcatgggcgcgatgctgcgcgaccacaagctgctcaacaccaccagcgtcaacacctgg
cggatcgtccaggcgacgccgcgcaacgagaccatgctggccgtgctcggcatggagtcc
ggcttcgagaccggcgaattcgcggtcatcagcgagcaggatattctcggcgaccgcctg
gtgcgaccgcgcaaggcgagccgcaagctcgacaatttcatctcggaggtgacgagcctc
gcgactggcgatctggtggtgcacgtcgagcacggcatcggccgcttcgtcgggctccag
acactggaagtctccggcgcgccgcatgactgtctcgaattgcattatgcggccgagaca
aaactgttcctgccggtcgagaacatcgagctgctgtcgcgctacggctccgacagcgcc
aatgtcgagctcgaccgtctcggtggcggcggctggcaggcgcgcaaggccaagctgaag
aaccgcatccgcgagatcgcgggcgaattgatcaagatcgccgccgagcggcagctccac
gaagcgccgaaattcccgttgcagccgcatgtctatgacgagttctgcgcacgcttcccc
tatgacgagaccgaggaccagctgggggcgatcaattcgaccctgaaggacctcgagatc
ggccgcccgatggaccggctgatctgcggcgacgtcggcttcggcaagaccgaggtggca
ttgcgtgcggcattcgcggtggcgctggaaggcaagcaggtcgccgtcgtagtgccgacc
acgctgctggcgcggcagcattcgcggaccttcaccgagcgcttcaagggctttccggtc
aatgtcgcacaggcgtcgcggctggtgtcgaccaaggatttgacccagaccaagaagggg
ctcgccgacggcagcgtcgacatcgtcgtcggcacccatgcgctgctcggcaaggcgatc
aagttcaaggacctcggcctcctgatcgtcgacgaggagcagcatttcggcgtcagccac
aaggagcggctgaagcagctccgtgcccaggtccacgtgctgacgctgtcagcgacgccg
atcccgcgcacgctgcaactggcgctgaccggcgttcgcgagctctcgatcatcgcatcg
ccgccggtcgatcgccttgccgtgcgcaccttcgtcgcgccgcatgatccgctgatgatc
cgcgaggcgctgttgcgcgagcgctaccgtggtgggcaggccttctatgtcgtgccgcgg
atcgaggacctcgccggcgtcaaggatttcctcgacaagaacgtgcccgagatgaaggtc
gcggtcgcccacggccagatgccgccgaccgtgatcgaggacatcatgtcggcattctac
gacggcaaatacgacatcctgctgtcgaccacgatcgtcgagtccggtctcgacatcccg
aacgccaacacgctgatcgtgcatcgcgccgacatgttcggcctggcgcagctctatcag
ctgcgtggccgcgtcggccgctccaagttgcgcgcctatgcgctgttcacgctgccggca
cagcagaagatcaccgcgcaggccgagcggcggctcaaggtgttgcagtcgctggagacg
ctgggggcgggcttccagcttgcctcgcacgacctcgacatccgcggcgccggtaatctg
ctcggcgaggagcagtccggccacatcaaggaggtcggcttcgagctgtaccagtcgatg
ctggaggaggcgatcgtcaacctcaaggccggcgtcgccgaacccgccgccgaccgctgg
tcgccgcagatcacgatcggcatgccggtcctgatccccgaggactatgtcaacgacctc
agcgtgcggctgtcgctctatcggcgtctcgccgatctcgacaccgacgaggacatcgat
gctttcgccgccgagatgcgcgaccgcttcggcgtgctgccggacgaggtgcgctatctg
ttcaaggtcgccgcgatcaaggcctattgccgcagggccaatgtcgagaagatcgacgct
ggcccgaagggcgccgtaatcaccttccgcgacaacagcttcgcgcatcccgaacgtctg
gtgagcttcatccgtcaacacggccaggcggccaaggtgcggccggacatgaaggtggta
ttcctgcagcagtgggacacgccggaagaacggctcgccggcaccaccgagatcctgcgc
cagctcgccaatctcgcggagagcaagaaggcggcgtga
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