Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2: IPI25_02480
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Entry
IPI25_02480 CDS
T07026
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
broc
Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2
Pathway
broc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
broc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPI25_02480 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
broc03021
]
IPI25_02480 (rpoB)
03400 DNA repair and recombination proteins [BR:
broc03400
]
IPI25_02480 (rpoB)
Enzymes [BR:
broc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPI25_02480 (rpoB)
Transcription machinery [BR:
broc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPI25_02480 (rpoB)
DNA repair and recombination proteins [BR:
broc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPI25_02480 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF5829
RnfC_N
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QQR67116
LinkDB
All DBs
Position
523552..527244
Genome browser
AA seq
1230 aa
AA seq
DB search
MEIRNYGKVNDVVEIQNLVQIQTRAYRNFLQADVPASKRKNQGVEAILREIFPISNYDGT
MSLDYIKYELGKPRYTQDECRQLRLTYGCPFRIWLRLNKAEPIEEEVYVGEIPVMVGGGE
FIINGTERVIVTQLHRSPGIDFIEEFHAEKRLHSCRIIPERGSWIELEVGKKDILTVKID
QSGKLPATCFLRALSEKYTNDEDIIRLFYETETVKISDFASATKLRGKYTVEKIVNPQTG
EIVLEAGRQMSDTIIKAVVDMEIKKIEVIKKMEDLLILNSLESDFTKSHEDALLKIYARF
RPGNPQQVEKARQLFYDKFFDIKRYRLGAVGRFRLNRKMGHAINEAEMTLQKEDYVEAIR
YIMKLRKGEMGASVDDIDNLGNRRLRTIDELAGEELRKGFLKLRRTVQERLSVKDSEQMT
PRSLVNSKAIFSAIDYFFSRSELSQVLDQTNPLAQLTHERRLSALGPGGLNRKRAGFEVR
DVHVSHYGRVCPIETPEGTNIGLIASLSIYATTDEYGFLITPYRIIDKGRLVEKITYLRA
DEEENKIIAPADVLIKGKEKMEKGSVLCRYNGDFHQENFKDINYMDVSPKQLVGVSASLI
PFLEHSDANRALMGSNMQRQAVPLLRTEPPIIATGMERFVAQNSSMTVQAANAGTVTMVT
ADEIIIDDRDTYKLRKFVGLNEGTCLNQKPIVAYGQKVKKGEVIADGAATCNGELSLGKN
VLVAFMTWDGYNFEDAIVISEALLKDDRFTSIHRDEFEVEIRETKLGREEFTRDIPNVSE
KALSNLDENGVIRIGTKVKPGDILVGKIAPKSRSELSPEEKLLHAIFGRAGEDVKNESLE
VPSGMEGIVINTQVFSRKSYLSDDKRQKILHDISEIELKYDENISKEFVKMLKAVDEEIK
EPMVDVQTGQVYTIERGAPLKSILILEEQFDIQNIEFSNKQKKEKACEISKEFCEKIEFL
KDERDRKINNLKRGDELPTGVLELAKISIATKRKLSVGDKMAGRHGNKGVISKILPEEDM
PFLADGTRAEMLLNPLGVPSRMNVGQILETHLGLAAKKMGFRAITPIFDGATEEEIRSTL
KESDLPEDGKLVLYDGRTGEPFEQKVTVGYMYMLKLHHLVDEKVHARATGPYSLITQQPL
GGKARFGGQRFGEMEVWALEAYGAAHNLQELLTVKSDDVEGRTKIYESMVKGENTLEAGT
PASFEVLANEIAGLGLSLKLEKKKTEVLKV
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atggaaattcgaaattatggtaaggttaatgatgtagtagagattcagaatctcgtacaa
atacaaactcgggcttaccggaattttttgcaagcggatgtgcctgcttccaaaaggaag
aatcagggggtcgaagcaatcctgcgtgagatatttccgatcagtaattacgacggaaca
atgtctttggattatattaaatatgagcttgggaagccgcgatatacgcaagacgagtgc
aggcaattacggttgacctacggttgtccgtttagaatatggctgcgtttgaataaagca
gaaccgattgaagaagaagtgtacgtgggcgaaatacctgtcatggttggcggaggagaa
tttattatcaacggaactgaacgggtaattgtgacccagttgcaccgctcgcctggtatt
gattttattgaagaatttcatgccgaaaaaaggttgcattcctgtagaatcatccctgag
agagggagctggattgagttggaggttggtaaaaaagacatactgacggttaaaatagac
cagagcgggaaattgcctgccacgtgtttcctccgagcgctgtctgaaaaatacacaaat
gatgaagatattatcaggcttttttatgaaacggaaaccgtgaagatttcagatttcgcc
tcagccacaaaattaagaggaaaatataccgttgaaaagatcgtaaatccgcagactggg
gagattgtgcttgaagcaggcaggcagatgtcagataccataatcaaggcagttgtcgat
atggaaataaaaaaaatagaagtaattaaaaagatggaagatttgctgattttaaattca
ttagaatctgactttacgaaatctcacgaagatgcactgctaaaaatttatgcccgattc
cgtcctggaaatcctcagcaagtggaaaaggctcgtcaattgttttacgacaagtttttt
gatataaaacgatataggttgggtgccgttggaagattcagattaaatcggaagatgggg
catgctattaacgaagccgagatgactctgcaaaaggaagattatgtggaggcaattcgg
tatataatgaagttaaggaaaggcgagatgggggcgtccgtcgatgatattgataatttg
gggaacagaaggttacgtactatcgatgagttggctggtgaagagttacgtaagggtttt
ttgaaattgcgaagaacggtacaggagagattaagtgtgaaagattctgagcaaatgact
ccgcgttcgttggtaaattcaaaagcaattttttcagcgatagactattttttcagtaga
agtgaactgtcgcaggtgttggatcagacgaatcctttggcccagttgactcatgaaaga
agattgagtgctttaggccccgggggcttgaatagaaaaagggctgggtttgaagtcaga
gatgttcacgtatcgcactatggcagggtttgtcccattgaaactcctgaaggtacgaac
ataggtttaattgcttcgttgagtatatacgcaacaaccgatgaatatggtttcttaatt
actccctatcgcatcattgataaaggaaggcttgttgaaaaaattacttatcttcgtgca
gatgaagaagaaaataagataatagcccctgcagatgtgctgattaagggaaaagaaaag
atggaaaaaggaagtgtgctatgtcgatataatggtgatttccatcaggagaattttaaa
gacataaactacatggatgtttctccaaaacaattggttggtgtgtccgcaagtttaata
ccgttccttgagcatagtgatgcaaacagggcactcatggggtcaaatatgcaaagacaa
gcagtccctttattaagaacggaaccgccaataatagcaacaggaatggagcggtttgta
gctcaaaattcaagtatgaccgtacaagcagctaatgcgggcacggttacaatggtaaca
gctgatgaaattataatcgacgacagggatacgtataaactacgaaaatttgtcggttta
aatgaaggaacctgtttgaatcaaaagccgatagttgcatatggtcagaaagtaaaaaaa
ggagaggttatagcagacggggcggctacgtgtaatggtgaactaagtcttgggaagaac
gttttggttgcttttatgacgtgggatggatacaactttgaggatgctattgttattagc
gaggcgttgctgaaagatgaccgatttacttctatacacagggatgagtttgaagtagaa
atcagggaaaccaaacttggaagagaggagttcacgcgtgatatccctaatgtatcagag
aaggcattaagtaatcttgatgagaatggggtaatcagaatcggaacaaaagtaaagccc
ggcgatatattggttggcaaaattgccccaaagagccgaagtgaattatcccctgaagaa
aagttactgcatgccatttttggaagagctggcgaagacgttaagaacgaatccttagaa
gtcccctcaggaatggaaggaatagttataaatactcaagtgttttcgagaaaatcctat
ttgtccgatgataaaagacaaaaaattttgcatgatataagtgaaatagagctgaaatat
gatgaaaacatatcaaaagaatttgtcaaaatgttgaaggctgtagatgaagaaattaag
gaacctatggtagatgtacaaacaggtcaggtatatacgattgaacgtggggcaccgcta
aagtcgatactgattttagaagaacaatttgacattcaaaatatagaatttagtaataag
caaaaaaaggaaaaggcctgtgaaataagtaaagagttttgtgagaaaatagaattcctg
aaagacgagagggatagaaagattaataacttaaaacgaggtgatgaactgcctacgggg
gttttggagctcgcaaagatatcgatagctacaaaaagaaaattatcggttggtgacaag
atggctggtaggcatggcaataagggtgttatttcgaagatacttcctgaggaagatatg
ccatttttagctgatgggacgcgggcagaaatgttattaaatccattgggagtgccttca
agaatgaatgttggccaaatactggaaacccatttaggattagcagcgaaaaaaatggga
ttcagagcgattacccctatatttgatggcgctacggaagaggagattcggtctacttta
aaggaatcggacttaccggaggatggaaagttggttttgtatgacggacgtactggtgaa
ccttttgagcagaaggttacggtaggttatatgtatatgttaaagctccatcatttagta
gatgaaaaagtacatgcaagggcgacagggccttactcgttaattacacagcaaccatta
ggtggtaaagcaaggtttggcggtcagcgatttggtgaaatggaagtatgggcgctggag
gcttatggtgcggctcataatctacaagagttgcttacggtaaagagtgacgatgtagag
ggaagaacaaaaatctatgaatcgatggtaaagggtgaaaatactttggaggctggaact
cctgcatcatttgaagtgcttgcgaatgaaattgctgggttgggtctaagtttaaagttg
gaaaagaaaaagacggaagtcctgaaagtgtaa
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