Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2: IPI25_02485
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Entry
IPI25_02485 CDS
T07026
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
broc
Candidatus Brocadia sp. Ega_18-Q3-R5-49_MAXAC.112v2
Pathway
broc03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
broc00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IPI25_02485 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
broc03021
]
IPI25_02485 (rpoC)
03400 DNA repair and recombination proteins [BR:
broc03400
]
IPI25_02485 (rpoC)
Enzymes [BR:
broc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IPI25_02485 (rpoC)
Transcription machinery [BR:
broc03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IPI25_02485 (rpoC)
DNA repair and recombination proteins [BR:
broc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IPI25_02485 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
RPOC_hybrid
7TMR-HDED
Blo-t-5
Motif
Other DBs
NCBI-ProteinID:
QQR67117
LinkDB
All DBs
Position
527323..531432
Genome browser
AA seq
1369 aa
AA seq
DB search
MADIMYDKINEYSSVKISLASTEDIRSWSYGEVKKPETINYRTYRAEKDGLFCERIFGPE
RNWECFCGKYKGIKHKGIICDRCGVKITHSRVRRKRMGHINLAAPIVHIWFFKAMPSRLG
TLLGMKTTSLERIIYFQDYVVIDQGSTPLVEYQMLSEEEFKANREKYGEQSFKAGMGAEA
IRALLQKLDLVTLSKELREELNQTKSKQRAKEIIKRLEIVEAFRDSGNKPDWMVLSVVPV
IPPDLRPLVLLESGNFATSDLNDLYRRIINRNNRLKKLIDLNAPEVIIRNEKRMLQQAVD
ALFDNTRGKRPVLGSSNRPLKSLTDMIKGKQGRFRENLLGKRVDYSARSVIVVGPELKLH
QCGLPKKIALELFQPFIIRRLKELGLADTIKSAKKMLGRKDNEVWDILEEVVKRHPVLLN
RAPTLHRMGIQAFEPILVEGNAIKLHPLVCRGFNADFDGDQMAVHLPLSIEAQVEAMTLM
LSTNNIFSPASGEPIITPTQDIVLGCSYLTTSLQDSAEEKLKIFSGPEEVVYALALKRVH
LHTKIELRIKRAKIIKDKFGTEEPKNGLCKTTVGRVIFNNILPDGMPFYNYTLDLKGISR
IIQDCYKLLGREKTIVLLDDIKEIGFKECTKAGLSFAVTDVKMPTKKQEIIDKTQEEIEK
IQKLYRKGIITEGERYNQIIDAWTYAGERVAEEMLNELKHDVREGKSYLNPVYLMSSSGA
RGSSQQLRQLAGMRGLMAKPSGKIIEAPIKANFREGLGVLEYFSSTHGARKGLADTALKT
ADSGYLTRKLADVAQNVVITADNCGTTNGITKSVVYRGEKVEVPLSKVITGRVARNNIVD
LVKDEVIVRENELITEEKARKIEALGYEKIKVRSPLTCEMSLGLCMKCYGMDLSRGRQVE
EGMAVGIIAAQSIGEPGTQLTMKTFHIGGTATRSVEESEIKAKRGGSVKYNNLTVVKNPQ
GKNVAINANGEILLIDSKGRQIDKHTIVLGAEVLVRENDTVVAHQVLSRWDPHMIPILTE
MAGKIRFEDIVIGKTMRQESDISTGVKRKVIMEHKGDLHPQIIIEDETGKILGLYPIPEK
AHIEVEEGDGVTAGTLLAKTPREISRTEDITGGLPRVAEIFEARKPKEPAVMSEIDGVVE
VGEKRRGKRTILVKSETGMEIEHLVPRGKHLKVHRGDRIKPGNPLVEGPLILQDILRISG
EEELQTYMLKEVQNVYRSQNVPIDDKHIEIIIAQMLRKVKVDDVGDTSLLPGQIIDKFRF
KEENKKIIEKGGKPATAKPLLMGITKASLQSDSFISAASFQETTKVLTRAALEGKVDGLV
GLKENVILGHLVPAGTGYKTYCSLSAVPVEVPAPEEGEKYEEKEIVPSI
NT seq
4110 nt
NT seq
+upstream
nt +downstream
nt
atggcagatataatgtacgataaaatcaacgagtatagttcggtgaagatatctcttgca
tcaacagaggacattagaagctggtcttacggagaggttaagaaaccggaaacgattaat
tatcgtacctaccgggctgaaaaagatggcctcttttgcgaacgaatttttggtccggaa
agaaattgggaatgtttttgtggtaaatacaaaggaataaagcataaagggataatctgt
gataggtgtggagtaaagattacccactcccgcgttagaagaaagcgcatgggtcacata
aatttggctgcaccgattgtgcatatctggttctttaaggcaatgccatcccgtttaggt
actcttctggggatgaaaacgacttctttggaacggattatctatttccaggattatgtt
gtaattgatcagggaagtacgcctctggttgaatatcaaatgctcagcgaagaagaattc
aaggcgaatagggagaaatacggagagcaatcatttaaggcagggatgggagctgaggcg
atacgtgcattgttacaaaaactcgatttggtaaccttgtcaaaagaactgcgtgaagag
cttaatcaaacgaagtccaagcaacgagcaaaagagataattaagagattagaaattgtt
gaggctttcagggattctgggaataaaccagattggatggttttgagtgtcgttccggtt
attcctcccgatttaagaccactggtactcttggagagtggaaattttgcaacatcagat
ttaaatgatctttaccgaaggattattaatagaaacaatcgtctaaagaaattgattgac
ttaaacgcgccggaagtaattataagaaacgaaaaaaggatgttgcagcaggctgttgat
gcactatttgacaataccagaggaaaacgtcctgtgttaggtagtagtaacagaccttta
aaatcattaaccgatatgataaaggggaaacaagggcgtttcagagaaaatttgcttgga
aaaagggtagactattcggcacgttcagtaatcgtggttggaccggaattgaaattgcat
caatgcggtttgcctaagaagatagcccttgagttgtttcagccgttcatcatacggaga
ttgaaagagttgggactggcagatacgattaagagtgcaaaaaagatgttgggtcgtaag
gacaacgaagtgtgggatattctcgaagaggtggtaaagagacacccggtattactcaac
agagcgccaactttacatagaatgggaattcaggcttttgagccaatactggttgaagga
aacgcaatcaaattacatcctttggtttgccgtggcttcaatgcagactttgatggagat
cagatggcggttcatctccctctttccattgaagctcaggttgaagcaatgactctgatg
ctgtccaccaataatattttttcacctgcttctggtgagccgatcataactcctacccag
gatattgtgcttggttgctcttaccttacgacaagtttgcaggatagtgctgaagaaaag
ttaaaaatatttagtggccctgaagaggttgtttatgcgttggcattaaaaagggtacat
ttgcatacgaagattgagttaagaataaagcgggcaaaaattatcaaggacaaatttgga
actgaggaaccaaaaaatggtttatgcaaaacaacagtagggcgcgtcatatttaacaat
atactacctgacggaatgcctttttataattacactctcgatttgaaaggtatcagccgg
ataattcaggattgttataaacttctcgggcgagaaaaaacgattgttttgttggacgat
attaaggagataggtttcaaggaatgcacaaaagcaggactctcttttgcggtaaccgat
gtaaaaatgccaacgaagaaacaggagattatagacaagactcaggaagaaattgagaag
atacaaaagttatatcgaaagggtattataacggaaggtgaacgatataaccagatcatt
gatgcttggacatacgctggtgaaagggttgctgaggagatgctgaatgaactgaagcat
gatgtgcgggagggaaaatcatatttgaaccccgtgtatttgatgtcttcatcaggtgca
agaggtagctctcagcagttaaggcagttggccggaatgcgtgggttgatggcaaaacct
tccggcaagattatagaagctccgattaaggcaaattttagagaaggtttgggggtgttg
gaatattttagctccacacacggcgcgcgaaaaggtttagcggatacggcattaaagact
gcagactctggttatttaacgagaaagttggctgatgttgcccaaaatgtggttataacg
gctgataactgcggaactaccaatggtatcacgaagagcgtagtttatcggggggaaaaa
gttgaggtgccgctcagtaaggtaattacggggcgtgtcgcaagaaacaacattgtagat
ttggtaaaagacgaagtaattgtaagagaaaatgaattgatcacggaggaaaaggcaagg
aagatagaagctttaggatatgagaagattaaagtgcggtctccgctaacctgtgaaatg
tcgttggggctttgcatgaaatgctatggaatggatttgtcgcgaggacggcaggtggaa
gaaggtatggcagtggggattattgcagctcagtcaattggtgagcccgggacgcagctt
accatgaaaacatttcatatcgggggaacggcaactcgttccgtggaagagtctgagata
aaagctaaacgtgggggaagcgtaaaatataataatttgacggtggtgaaaaatcctcag
gggaagaatgttgcaattaatgcaaatggagaaatcttgctcattgattctaaggggaga
caaattgataagcataccattgtacttggggcggaggtgttagttcgcgaaaatgatact
gttgttgctcaccaggtgttgtcgagatgggaccctcatatgataccaatattgacagaa
atggctggtaaaattcgttttgaagacattgtaattggtaaaacgatgagacaggaatct
gacatttctacaggggtgaagcggaaagtaatcatggagcataaaggggatttgcaccct
cagatcattatcgaagatgagacggggaaaattttgggactctatccaattccggaaaaa
gcacacattgaagtggaggaaggtgatggtgttactgccggtacgctgctcgctaaaaca
ccaagagaaatttcaagaactgaagatattactggaggattgcccagagtcgctgaaata
tttgaggcaagaaagcctaaagaaccggcagtaatgagcgaaatagatggtgtcgtggaa
gtgggtgaaaaaaggagaggaaaaaggaccatactggtcaaaagtgagacgggaatggaa
atagagcatcttgttccgagagggaaacatttaaaggtgcatagaggggaccgcattaag
cctggaaatccgttggtggagggacctcttattctgcaagacattttaagaataagcgga
gaggaagagttgcaaacatatatgctgaaagaagtccagaatgtctatcgttcacagaat
gtacccattgatgacaaacatatagaaatcattatagcgcaaatgctcagaaaagtaaag
gtggacgatgtgggtgacacgagcttgttgccaggacaaattattgataaatttagattc
aaagaagaaaataaaaagattatagaaaaaggtgggaaacctgcaactgcaaagccatta
ttgatgggtattacaaaggcatctttgcaatcggatagcttcatatctgcggcttcgttt
caggaaacaacgaaagtgttaaccagagctgcacttgaaggtaaggttgacggcctagtt
ggattaaaggaaaatgttatacttggacatctcgtaccggccggaacgggctataaaact
tattgttcgctttccgccgtgccggtggaagtacctgctcctgaagaaggagaaaaatat
gaagagaaagaaattgttccgtcaatatag
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