Brassica rapa (field mustard): 103832123
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Entry
103832123 CDS
T03449
Name
(RefSeq) tetratricopeptide repeat protein SKI3
KO
K12600
superkiller protein 3
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103832123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103832123
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
103832123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_11
TPR_17
TPR_14
TPR_16
TPR_19
TPR_7
TPR_CcmH_CycH
TPR_12
TPR_9
ARM_TT21_C
TPR_20
BTAD
TPR_NPHP3
Y2_Tnp
DUF5355
Fic_N
Motif
Other DBs
NCBI-GeneID:
103832123
NCBI-ProteinID:
XP_033131987
LinkDB
All DBs
Position
A07:27332018..27337199
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AA seq
1161 aa
AA seq
DB search
MELEQLEKSVETNPDDPSLQFELGLYLWEHGGDSERAAEHFVLSAKLNPDNADAFKYLGH
YYSRVTLDHNRAAKCYQRAVLLNVNDSESGEALCDLLDGQGKEILEVAVCHNASEKSPKA
FWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTVSDLWEALGLAYQRLGMFTAAIKAYGR
AIELDETKIFALVESANIFLMLGSYRTSVELFEQALKISPQNISVLYGLASGLLSWSKEC
IDLGAFGWAASLLEDARKAAKESTELASNMSSIWKLHGDIQLTYARCFPWSGETENSEIT
LKTFNDSILSWRSACYSTALSAKSSYQRALHLSPWQANLYTDIAITCDLVSSLTDVSETS
SSWKLPEKMALGALLLECDNSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWAFMGQ
IFRESDEMKLAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQISPLAE
YQVGLAWLALLQGSISSPQIFACIDQAVQRTPDYPESHNLHGLVCEARHNYHTAIASYRL
ALAAMSVCPDSSVKSHAGKISINLVRSLSKAGRFKESVKECANLKSKGLLDAGGLQIYAF
SLWKIGENDSALSVVRELAGRISTMEKTSIAFPISFICSLLYCISGLDSAITSIQKMPKD
FFQSSKISFIVSAIHSLDQSDRLQTIVASTRSYISSQEEIAAMHYLIALSKLLKTGAGEF
LGFEKGIAHLRKALHMYPHSNLLRNLLGYILLAGEGTKEVCAASRCCIINVSECGNKEGL
KSALEVLGGGSVACNVIGNTAPRFSFPTCHCQSLNAPVVVVELQRFLHQEPWNSDVRYLL
ILNLMQKAREQRFPRQLCSAIERLISVALSDEASEYQKFQLLLCASEMSMQKGNTEESID
YARKASSLSLPRSYLFLSHLQLCRVYASKGSTRNMQEEYRACLELKTDSNIGWICLKLIE
SQFDLEADANLLEMMSLQESPNQKNHSWKEWMAVYSLALGLVSFGKKDFTSAEEFLAQAC
SLGDKESCLLLCHGAVCMELARQSNDSHFLSLAVTSLSKVQASSLTPLPIVYALLAQAHG
SLGSKEKWKKNLRLEWFCWPPEMRPAEVYFQMHILARESEDSSGIENCQTPEKWVLRAIH
TNPSCMRYWNVLDKLVQYPIS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atggaattggagcagctggagaagtccgtggagacaaacccagacgacccttctctgcaa
ttcgaacttggtttgtatctgtgggaacacggcggagactcggagagagcggcggagcat
tttgtcttgtcggcgaagttaaacccggataatgcggatgccttcaagtacttagggcat
tactactcacgcgtgacgcttgatcacaaccgagctgccaagtgttaccagagagcagtg
ttgctaaacgttaatgactctgagtctggagaggctttgtgtgatttgttggatgggcaa
gggaaagagattttggaagttgcggtttgtcataacgcttctgagaagtctcccaaggct
ttctgggcgttttgcagattgggttacattcagcttcatcagaagaagtggtctgaagct
gttcagagtcttcaacatgctattagaggttatcctacagtgtctgacctatgggaagct
ctgggccttgcttaccagcgacttggaatgtttactgctgctatcaaggcgtatgggcgt
gcaattgaattagatgagaccaagatctttgcattagtggagagtgcaaacatctttttg
atgcttggttcatatagaacgagtgtggagctctttgagcaagccctgaagatttcacct
cagaatatttctgtgctctatggtcttgcttctggattgcttagttggtcaaaggaatgc
atagatttgggcgcttttggatgggctgcttcgttattggaggatgctcgtaaagctgca
aaggaaagcactgagctggccagcaacatgtcttctatatggaaattgcatggagatatc
cagcttacgtatgcaagatgctttccgtggtctggtgaaactgaaaactcagaaatcact
ttgaagacatttaatgattcaatcctttcttggagaagcgcttgttactcaactgcactg
tcagccaaatcttcttaccagcgagctctacacttatccccttggcaagccaatctctat
actgacatagccataacttgtgatctcgtttcaagcttaaccgatgtttctgaaacttca
agttcttggaagctaccagaaaagatggctctgggagcgttattacttgaatgcgacaac
tcggagttttgggttgctttgggttgtatgtctgataacagtgctttgaaactacatgct
ttgatccgggcgttgcatttggatgtatctttagccgttgcttgggcttttatgggccag
atcttcagggaatcagatgaaatgaaactggcaaagcaggcttttgactgtgctagaagc
atagatcctacacttgctctaccttgggccggctcagctgatacttatgctagggagtca
acatcagatgaggcttttgagagttgtttacgagctgcgcagatatcacctcttgcggag
taccaggttggtttggcatggcttgctttgctacaaggaagtatttcatctccgcagatt
ttcgcctgcattgaccaggcggtgcagcgcacccctgactaccctgaatcccataacctc
cacgggctagtctgcgaggcaagacataactatcataccgccatcgcttcgtacagacta
gcactcgctgcaatgagtgtttgcccagacagttcagtgaaatctcatgcaggaaaaata
tctatcaacttggtcaggtcactcagcaaggcaggacgtttcaaagaatctgtcaaggaa
tgcgcaaatctgaagtcaaaaggtttgcttgatgctggaggcttacaaatctacgccttc
tctctgtggaagattggtgagaacgattcggctctctcagtggttcgggagttggctggt
aggatctccacaatggaaaaaacctcaatagctttcccaatcagcttcatctgtagtctg
ctttactgcatatctggacttgattctgccatcaccagcatccagaaaatgcccaaagat
ttcttccagagttcgaaaatcagcttcatagtatccgccatccattctcttgatcagagt
gataggcttcagacgattgttgcgagcactcgtagctatatatcatcacaagaagagata
gctgcgatgcactatttgatagcactcagcaaacttctgaaaactggagcaggagagttc
cttggatttgagaaggggattgcacacctcagaaaagctctgcatatgtatcctcatagt
aatttgttaaggaacctgcttggatatattttgttagctggtgaaggaaccaaagaagtc
tgcgctgctagtagatgctgtatcataaacgtctctgagtgtggaaacaaggaaggtctg
aagtccgcgttagaggtcctcggtggaggatcggttgcttgcaatgtaatcggcaacaca
gctcctaggttctctttcccaacatgccattgtcagagtctgaatgctcctgttgtcgtt
gtggaactgcaaagattcttgcatcaagagccttggaacagcgatgtgagatacttgctg
attctgaatctaatgcagaaggctcgtgagcagaggtttcctagacagctttgtagtgct
attgagcgtttaatctctgtggcgctctctgatgaggcgtctgaatatcaaaagttccag
cttctgctttgtgcttctgagatgagtatgcaaaagggaaacacagaagagtctattgac
tatgctcgaaaggcttcttccctttcccttccacgtagctacctgtttctatcacatttg
cagctttgccgtgtctatgcatcaaagggaagcaccaggaacatgcaagaggagtacaga
gcgtgtctggagctcaagactgactcaaacattggttggatctgcctgaagctcatagaa
tctcagtttgatctggaggctgacgctaacctcttagagatgatgagcctacaagaaagc
ccgaaccagaagaatcattcatggaaagagtggatggctgtttacagtctagctcttggc
ttagtttctttcggaaaaaaagactttacctcagcggaggagtttcttgcgcaagcttgc
tcgttgggggataaagagagttgtctacttctctgccatggtgctgtctgcatggagctg
gctagacagtctaacgactcgcatttcctttcgctagctgtaacgagtctaagcaaagtt
caagcgagttcgttgactcctttgcctattgtgtatgctttattggctcaagcacatggg
agtcttggctctaaagagaaatggaagaagaatcttcgtcttgaatggttctgctggcca
ccagagatgagacctgcagaggtttactttcagatgcatatacttgcaagagaatcagaa
gacagttcagggattgaaaactgtcaaacccctgagaaatgggtgcttagggcgattcac
actaacccttcttgtatgagatactggaacgtcttggataagcttgttcaatatcccatt
agctaa
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