Brassica rapa (field mustard): 103836952
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Entry
103836952 CDS
T03449
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103836952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103836952
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103836952
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103836952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_HEAT
Motif
Other DBs
NCBI-GeneID:
103836952
NCBI-ProteinID:
XP_009111526
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All DBs
Position
A09:498262..505563
Genome browser
AA seq
1375 aa
AA seq
DB search
MAMLMIPSKVSSHVRFLLMEFNDSDYHSLAQEICEFFDYGVETSICVLKTCFTFWKEGHT
NRLQIENVVSLVLKRVLEMPYFATLLSCALQGFEVTPEFVTAFHSDASTTDSFMQILSCH
QSSDKLQFVPNPFPSVGLHEADVFRSMDLNSLDAILTETAKETSVGDLIEELGYGFTSDA
SLCKEILSLFLPLTEAAISRILVVVVRTYAGLKDNYDAFLTFSSSLGCCTPTELHTPKSW
NVDILFETIKQLAPGTIWPTVIENLDHEGFDIPNMEAFLFFMMVVRNICKDPFPLHAICS
FVWKNMEGQLSFLKHAVLAPPEIFTFVHSTRKLLPMDIDEQLALSNHAWRSLDLLDVLCQ
LAESGHAVSVRSLLQYPLVHCPRTLLLGMTHIETACNIIQREVVSDLLPLMIKNTQDIGF
VLNLWQLNREFVIWGLLDAQNLGPDSMLRIIDIFHELKILSSVINSVPLSLGIKLAILAS
QRGFLEIESWLSKCIFLYKDVLFEECLKVIKDIHFQKSKDIFSKQFRSTDLMSDLCLDAT
SFLLNALKPHTNVITSRQLFEELEKVHEAVLNIGTFVAAAERKDNPIEAPPSEVQDKIYF
IMNNVSAANVESKGKEFSEILSIQYYPWFAQYMVIKRVSTEQQFHDLYLKFLDKVNSQQL
YKEIVQASYENCKVLLGSALIKSDSEERSLLKNLGSWLGKVTIGRNRVLRACEIDPKSLI
IDAYEKGLLIAILPFTAKVLESCQSSIAYQPPNPWTMPILGLLSEIYSMPNLKMNLKFEI
EIFFKNIGVNIKSVKPTSLLKNRNREIDGNPDFRNKDVGMAQGSRPQMIDEFKSENISPQ
NHVELPTNAGIHYAGVHSKLLPQATMLFSEWCQICSHPGENDASRTRHVLHLYQSGLLKG
DDKTESFFRILTEYSIAHCISSRETNSGALQSTQEVLEPSFIAIDIYAKLVFSILDYFRE
QEFSCKSFLLSKIVTVIVRSILKDADDEKTPLYPRPYFRLFINLLLDLSSWDHITDSENY
QVLVVFANAFHALQPLKIPAFSLAWLELVSHRSFMLKLLSLNGQKGWPYAQHLLVGLLQF
LEPFLRSAELSGPVYLLYKGTLEVLLMLLHEYPEFLCGYHFTFCNVIPPSCVQMRNIILG
AYPRNMRVPDPSTPNLMIDRLPQIVEAPCILSEIDALLKQKRMKSHLDEYLSMRQHDFSF
LNGLKHNLLFRNSEADSAGTRYNVPLVNALVLYVGLQAIQQLQADVSESRSNAHTAAMQM
FKALSCELDAEGLYLLLSAIANQLGHPNRHTHYFSYIMLYLFFESDQEIIKEQVTRVLLE
RLTVKGPHPWGLVFTVTELTKNPRYGFREQGFIRCAPGIEEVFESVASSEAGVNT
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atggcaatgctcatgattccctccaaggtctccagtcatgtccggttcttacttatggaa
ttcaacgattccgactatcactctctggcccaagagatttgtgagttctttgactatgga
gtagaaactagcatttgcgttctcaagacctgcttcaccttttggaaagaaggccacaca
aatagattgcaaattgagaatgtagtatccttggttctcaaacgtgtcttggaaatgcct
tatttcgcgacactgctttcttgcgcactccaaggttttgaggtcactccagagttcgtc
actgcatttcactctgatgcaagcacaactgattccttcatgcagattttatcctgccat
cagtctagtgataaactccaatttgttcccaaccctttcccttcagtgggactgcatgaa
gctgacgttttcaggagcatggatttaaatagccttgatgctatcttaactgaaactgcg
aaggagactagtgtgggagatctcatagaagaattgggttatggattcacctctgatgcc
tcactatgcaaagagatcttgtcccttttcttgccattaacagaggctgctatctcaaga
attcttgtcgttgttgttcgtacgtatgctggtcttaaagataattacgacgcctttcta
acattcagttcgtcccttggatgttgcaccccaaccgaacttcacacaccaaagtcatgg
aatgttgacatcctttttgagacaattaaacagctagctcctggcacaatctggccgact
gtaattgaaaatctggatcatgaaggatttgatattcctaacatggaggctttcttgttt
ttcatgatggttgttagaaatatctgcaaggacccatttcctcttcatgccatttgttct
tttgtgtggaaaaatatggagggtcagctatcttttcttaagcatgcagtattggcaccg
ccagaaatattcacctttgtccactctactaggaagctgttgcctatggacatcgatgag
caattagcactttccaatcatgcatggcggtctcttgatcttttagatgtgctatgccag
ttggccgagagtgggcatgctgtttcagttcgttcattgcttcagtatccactggtccat
tgtcctagaaccttgcttcttgggatgactcatattgaaactgcttgtaatatcattcag
cgtgaggtggtatctgatttacttcccctgatgataaagaatacccaggatattggtttt
gtccttaacctctggcagctgaatagagaatttgttatttggggtcttttagatgcccaa
aatctcggaccagacagcatgctcagaataattgatatcttccatgagcttaagattctc
tcttctgttataaactcagttccgctgtcacttggcatcaaattggcaatccttgcctca
cagagagggtttctagagattgagagttggttgtcaaaatgcatttttctgtacaaggat
gtcctttttgaggagtgcctcaaggttatcaaagacattcattttcagaaatcgaaggat
attttttccaaacagttccgttccactgatcttatgtcagatctttgtttggatgcaaca
tctttccttttgaatgctttgaaaccgcatactaacgtaattacatcacgtcaactgttt
gaagaattagaaaaggtccatgaagcagttttgaacataggaacttttgttgctgcagcg
gagagaaaggataatccaatagaggcgccaccttcagaagttcaggacaaaatctatttc
ataatgaataatgtctcagcagcaaacgttgaatccaaagggaaagaattctctgaaatt
ttgtctattcagtactacccttggtttgcccagtatatggtcataaaaagagtgagtacc
gagcaacagtttcatgacttgtacttgaagttcttggacaaagttaattcccagcaatta
tacaaggagatagtccaagcttcctatgagaactgcaaggttctgttaggttcagcgctc
ataaagtcagattcagaagagcggtccttgcttaaaaacttaggcagctggcttgggaag
gtgaccattggaaggaatcgcgttttaagggcgtgtgaaatagatccaaaatcactgata
attgatgcatatgaaaaagggctgcttattgctatccttccgttcactgcaaaggttttg
gaatcatgccaaagcagtattgcatatcaacctccgaatccatggactatgcctatactc
gggttgctgtcagagatttattcaatgccaaaccttaaaatgaacctgaagtttgagata
gagatttttttcaagaacattggggttaatatcaaaagtgtaaaaccaacttcccttctg
aagaaccggaacagagaaatagatggaaatcctgattttaggaacaaagatgttggtatg
gcccagggatcccgaccacagatgatcgatgagtttaaatctgaaaatatttctccgcaa
aaccatgtagagctacctaccaatgcaggcattcattatgcaggcgttcattcaaagtta
ttgccacaggcaaccatgcttttttctgaatggtgtcagatctgcagtcaccctggtgaa
aatgatgcatcacgtacccgccatgtcttgcatttatatcaaagtggactactgaaggga
gatgataaaactgagagctttttccgtattcttacagaatattctattgctcattgcata
tcatctcgggaaacgaattctggtgccctgcaatctactcaggaagttctggaaccatca
ttcattgccatcgatatctatgccaaacttgtgttttctatcttggattattttcgtgag
caggagtttagctgcaaatcctttcttctttcgaagatagtgactgtcattgtgagatct
attttaaaggacgcagatgacgaaaagacaccactttatccaagaccatatttcagattg
ttcatcaacttgctgcttgatttatcttcctgggaccatataaccgatagtgaaaactat
caggttttagtagttttcgcaaatgcatttcacgcgctgcagcctcttaaaatccccgcg
ttcagcttagcgtggctagaactggttagtcacagaagcttcatgctcaaactactctcc
ctaaatggtcagaagggttggccgtatgctcaacacctgctggtgggtttgcttcagttt
cttgagccttttttgagaagtgctgagctaagcggaccggtttatctgctatacaaaggc
acactggaagtattgttgatgttgcttcatgagtacccggagtttctttgtggttaccat
tttactttctgtaatgtcattcctcccagttgcgtacaaatgcggaacattatcctaggt
gcttatccgcgaaacatgagggttccagacccgtcgactccaaacttgatgattgatcga
ctgcctcagatagttgaagctccatgtatcctttctgaaatcgacgctctacttaaacaa
aagcgaatgaagagccacttggatgagtatctttcgatgaggcaacatgattttagtttc
ctaaatggactgaagcataacctactattccgaaacagtgaggctgattcagctggcact
agatacaatgtaccattggtcaacgcacttgtcctctatgttggactgcaggctattcag
cagctacaggcagacgtgtctgagagtcggagtaatgcacatactgccgccatgcagatg
ttcaaggctttaagttgtgaacttgacgcggaaggactttacctgttgcttagtgcaatt
gccaaccagctaggtcatcccaacagacacacacattacttctcctacatcatgctctat
ctgttttttgagtcggaccaggaaatcatcaaggagcaggtaacaagagtgttgttggag
cgcctaaccgtgaaggggccacatccatgggggctcgtcttcacggtcacggagctcacc
aagaatcctagatatgggtttagggaacaagggttcataaggtgtgcaccaggaattgag
gaagtatttgaatcagttgccagttctgaagcgggggtgaacacttag
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