Brassica rapa (field mustard): 103843635
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Entry
103843635 CDS
T03449
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103843635
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103843635
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103843635
NCBI-ProteinID:
XP_009118623
UniProt:
M4EUL2
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Position
A09:44341337..44345944
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AA seq
431 aa
AA seq
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MVVLPTWILAMICLLFFVGAMDNSTHDKISSLSRSVEIEWNKHAVTNPDEVADEVIALAE
MSVRNHTERRKLGYFTCGTGNPIDDCWRCDRNWHKNRKRLADCGIGFGRNAIGGRDGRFY
VVTDPRDDNPVNPRPGTLRHAVTQDRPLWIVFKRDMVIQLKQELIVNSFKTIDGRGANVH
IANGGCITIQYVTNVIVHGLHIHDCRPTGNAMVRSSETHFGWRTMADGDAISIFGSSHVW
IDHNSLSHCADGLVDAIMGSTAITISNNHMTHHNEVMLLGHSDSYTRDKAMQVTIAYNHF
GVGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPKNPFAKEVTKR
VNTPTGHWKGWNWRTEGDLLQNGAYFTASGVAASGSYARASSLAAKSSSLVDTITSDAGA
LPCRRGRQCTS
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atggtggttcttccgacatggattttagctatgatatgtctactcttcttcgtgggagca
atggacaacagtacacacgacaagatctcatctctatccagatcggtcgaaatcgaatgg
aacaagcatgcagtgacgaatccggatgaagtagctgacgaagttatcgccttggctgaa
atgagtgtaagaaaccataccgagaggaggaagctaggttactttacttgcggaacaggc
aacccaatcgacgattgctggcgatgcgatcgcaactggcacaagaaccgcaaacgccta
gcggactgtggtatcggatttggaagaaacgcgattggcggtcgcgacgggcgtttctac
gtagtcactgacccaagagacgacaacccggttaaccctagaccgggaacattacgtcac
gccgtgacccaagaccgaccactatggatcgtctttaaacgtgacatggtgattcagtta
aaacaagagctaatcgttaacagcttcaaaacgatcgacggacgcggcgcaaacgttcac
atcgctaacggcggttgcatcacgattcagtacgtgacgaacgtcatcgtgcatggattg
catattcatgattgtagaccgacgggtaacgctatggttagaagctcagagacgcacttt
gggtggagaacgatggctgatggtgatgccatttccatctttggttcgagtcatgtttgg
attgatcacaactcgttgtctcattgcgctgatgggcttgtggatgctatcatgggctcc
accgcgattacgatctctaacaaccacatgactcaccacaacgaggttatgttgctcgga
catagtgattcttacacgagggacaaggctatgcaagttaccattgcttataaccatttt
ggagtcggacttattcaaagaatgccaaggtgtcggcatgggtacttccatgtcgtgaac
aacgactatactcactgggaaatgtatgcgatcggtggaagtgcaaacccaacaatcaac
agtcaaggaaaccgctacgccgccccgaaaaatccttttgctaaagaggtaacgaagaga
gtgaacacacctacgggtcattggaaaggatggaactggagaaccgaaggagatttgctt
cagaacggagcttacttcactgcttcaggagtcgctgcatctggtagctacgcacgtgcc
tctagcctcgccgctaaatcttcttcattggtcgatacaattacttctgacgccggagct
ctaccatgtcgccgaggacgtcaatgtacctcatag
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