Brassica rapa (field mustard): 103843826
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Entry
103843826 CDS
T03449
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103843826
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103843826
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103843826
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103843826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
103843826
NCBI-ProteinID:
XP_009118856
LinkDB
All DBs
Position
A09:45114511..45127714
Genome browser
AA seq
2377 aa
AA seq
DB search
MLMVPSKVAGHTRFLLESFNGSDVDSIAQEICQLVDVGIETSIPALKTCIDCFTVRRSHP
NALQLEKLVSLVFKRVLNNSDNLQTLISNALQDVELTDEFVDDLTDALGFTIPEKISVSL
VLADSERSDAKSSGRNLLLAEIEQLCASPGQIESTEQIQNVVLFLQHSEDLSSHLDSFLR
ILSSAQPRDDFSFALTPFLSPQHHQSYVFSDSSDNDFEAILDDIDKELDLGDLMGELGCG
LTADAQQCKEILSTFAPLGEAAIARILGNVARSCPDREDNHTTFPTFALALGCCIPTELP
TPRSWNADILIETIIQLAPGTSWRKVIENLDHSGFDIPNMESFSFFMRLYKTACKDPFPL
DAVCASVWKNMEGQLSFLKHAIAAPPEVFTFTHSPKKLVYVDNNMHSHEQQLGLSNQAWL
SLDLLYVLCQLAERGHTVLVSSLLHYPLTHCPKTLLLGMAHIKTAYNLIQREVLSVVFPL
IITNSQDSGFILHLWHQNAELVLWGILNAQNLKVDSILRIIEICHELKILAVVLESVPVS
FSIRLAALASLRGFLDIENWLPNCLYVYKDTFAVECLKFVKNVHFSQSEDFTSKHFHPSD
PLSDLHLDATALLLKVLKAHDNVITSSQLVDDIEKVNAAILDCNSKLQNGEAKDSSASNA
YGEDVEAEANAYFHQMFSGQLSVDAMVQMLSLYKDSLVQREKSIFDCMIANLFEEYRFFP
KYPERQLKIASILFGSVIKHQLISSITLGMALRLVLDSLRKPADSKMFLFGSKALEQFVN
RLVELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASVSHPGLSQSFPGNG
EFGSGIGQSALQLPSPVLPQQTNEVHIDDRSRVPSVPSNEAKPLLPSSSNISVDVSVTPK
NPGISTSSSTSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKISFI
INNISLANIESKGKDFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLF
KEILQNTYENCRVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNHVLRAREIDPKSLIV
EAYEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIE
VLFKNLGCDLKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPPIIQEPKTISPLKQI
DLPIDVANTDTPSKLLSQYVAPQRVYTNTLMEDEKVATLGLPDQLPSPQGLFPSSPSPLF
STSQPPALPNIGNHVVINQKLSGFGTHFPFPRVVPLAMDRAIKEIVAGIVQRSVCIACQT
TKELVLKDYALEPDETRIYSAAHLMVASLAGSLAHVTCKEPLRTSISGHLRSLFQDLNIK
NEALEQIVQLVTNDNLDLGCAAIEQAATEKAVQTIDADIAQQLLLRRKPRDGAGSSLSQN
SVSFIPESLRPKPGHLSLSQQRVYEDFVQLPWQKQSIHTSHGLSAASSSSGEVGLGSNYG
PVSGKSASDSLSGAENARMDMVSRASDLSVEGFESPFALLSSQVDPAGETGGLQFSNSIS
TSELSLVESSDTAMKETGTSLQTLTSAATMERLGGSNIAQPSLSTRDALDKYHIVMQKME
DLVANNAGDGEIQVVVSEVPEIILRCISRDEAALAVAQKAFKALYENASSSLHVSANLAI
LVAIRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLNLAEYNVHMAKHLDGGRN
KSATDFSISLLQSLVTEESSVISELHTLVDALAKLSSKSGSPESLQQLIDIIRNPVTNTS
GLSDSASGNENNDRQSKDEKLCSQVVCNTTANTEENTSWEYVVADPAGFRNRVSTLFKNW
YQICEVSGANDTACSQYVLHLHQTGLLKGDDTTESFFRILLELSVAHCISSEEISSGAGQ
SPQQAQSPSFLIIDIYAKLVFSVLKYFPEQESSIKLFLLSEIMAVTVRSIQKDAEDKKTS
LNPRPYFRLFINWLLDLCSLDPGTDGANFQVLTAFANAFHALQPLKVPAFSFAWLELVSH
RSFMPKMLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVNFLYKGTLRVLLVLLHD
FPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCIL
SEVDAVLKAKQMKNDVDEYLTLRQQNSTFLSELKQKLLLSSNEASSAGTRYNVPLINSLV
LYTGMQAIQQLQAGETQAQNVVALHMFKYLSMELDTEGRYLFLNAIANQLRYPNNHTHYF
SFIMLYLFFESNQEIIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWQHAFI
RCAPEIEKLFESVARSCGSLKPVVDEGMVSGWADNNH
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atgctgatggttccgtcaaaggtcgccggccatacccggttcttgcttgagagttttaat
ggctccgatgtcgactcaatcgcccaagagatctgtcagttggttgatgttggtattgag
acaagcattccagctctcaagacgtgcatagattgcttcaccgtccggagaagccatcct
aatgcgttgcagctggagaaacttgtatccttggtcttcaaacgtgttttgaacaactct
gataatctccaaaccctgatttcaaacgcactccaagatgtggagctcactgacgagttt
gtggatgatttgacggatgcgttgggctttacaatccctgagaaaattagcgtttctctg
gtcctggccgattctgaaagatccgatgcaaagtcaagtggacgaaacttattattggcc
gagattgagcaactgtgtgcctctcctggccagatcgagtcaactgagcaaattcagaat
gttgttttgtttctccagcattccgaggacctctccagccatttggattccttcctccgt
attctctcttctgctcaacctcgagatgacttctcttttgctcttacgcctttcctttct
cctcaacatcaccaatcttatgttttcagtgattcctctgacaacgactttgaggctatc
ctagatgatatcgacaaggaacttgatcttggagatctcatgggtgaattaggttgtggt
ctcacagctgatgcccagcaatgcaaagagatcttgtctactttcgcaccattaggagag
gctgctatcgccagaattcttggtaatgttgctcgttcatgtcctgatcgtgaagataat
cacaccacctttccaacattcgccctggcccttggatgctgcattccaactgaacttccc
acgccaagatcgtggaatgctgacatcttaattgaaactatcatccagcttgctcctggc
acaagctggaggaaagtaatcgagaatctcgaccatagtggatttgacatccctaatatg
gagtctttctcgtttttcatgcgcctatataaaactgcttgcaaggacccatttcctctg
gatgctgtatgcgcttctgtctggaaaaatatggaaggtcaattatcctttcttaagcat
gccatagccgccccaccagaagtgttcacctttacgcattctccaaagaagctggtatat
gttgataataatatgcacagccatgagcaacaattaggactttccaatcaagcttggcta
tctctcgatctcttatatgtgttatgccagctggccgagagaggtcatactgttttagtt
agttcgctgctccattatccactcacacattgtcctaaaaccttgcttcttggaatggca
cacatcaaaactgcctataatctcatccagcgagaggtgctttctgttgttttcccgctg
ataataacgaattcccaggatagtggttttatccttcatctctggcatcaaaatgctgag
ctcgttctgtgggggattttaaatgcccaaaatcttaaagtagacagcatactcagaata
attgaaatctgccatgagctcaagattctcgctgttgttttagaatcagttccagtctca
ttcagcatcagattggcagcccttgcctcactgagaggatttttggacattgagaactgg
ctgccaaactgtctatatgtgtataaggacacctttgctgtggagtgtctcaaatttgtc
aagaatgtgcattttagccaatcggaggattttacttccaaacatttccatccgtctgat
cctttatcagatcttcatttggatgcaacagctttgcttttgaaagttttgaaagctcat
gataatgtgattacttcatctcaactggtagatgatatagaaaaagtcaatgcagcaatc
ttggattgtaattcgaaactgcagaatggcgaagctaaagattcatcagcttccaatgca
tatggagaagatgttgaggcagaagcaaacgcttatttccatcaaatgttttctggtcag
ctgagtgttgatgctatggttcaaatgctttccttatacaaggactctttggttcagagg
gaaaaatcaatttttgattgcatgattgctaatctatttgaggaatatcgttttttcccc
aagtatcccgagaggcagctgaaaatagcttccattctctttggttctgttatcaagcac
caacttataagctcaatcacattgggtatggcactgcgtctagtcttggattctttgcgt
aaacctgcagattcaaaaatgtttctctttggaagcaaagctctggaacagtttgtgaat
cgtctggttgaattgcctcagtactgcaaccatattttgcaaatatctcatctgcgtagc
actcatcccgagttagtcactgttattgaacaagcactttcaaggatatcatctggtaat
ttagagtcagatgcctctgtttcgcaccctggtctttcacagtctttccctggaaacggc
gagtttggttctggaattggtcaatctgcgttgcaacttccttctcctgtgctgcctcaa
cagactaatgaagtgcatattgatgaccgcagcagagtaccaagtgttccatctaacgaa
gcaaagccgcttctgccgtcatcatctaacatttccgttgatgtttctgtcactcctaag
aatcctggcatttcgacttcttcatcaacctcagctggttttgttcgtccagctcgtgga
gccacttcgacgaggtttggctctgctttgaacatagaaaccctggttgcagcagcagag
agaagggaaaacgcaatagaggctccaccgtcagatgttcaggacaaaatttcattcata
atcaataatatatctttagccaacattgaatctaaagggaaagattttgctgagatttta
cctcagcagtactatccttggtttgcacagtatatggttatgaaaagagcaagcatcgag
cccaattttcatgatttgtacttaaagttcttggacaaagttgattccaagctgttattt
aaggagatacttcaaaatacttacgaaaattgcagggttctcttgggttcagagctcata
aagtcaagctcggaagagcgatccctgcttaaaaatttaggcagttggcttggaaagttg
accattggaaggaatcatgttttaagggcgcgagaaatagatccaaaatccttgattgtg
gaggcatatgaaaaagggttgatgatagcagtaattccattcacttcaaaggttcttgag
ccatgccaaaacagtattgcgtatcagcctcccaatccttggacgatggctatacttggg
ttactcgctgagatctattcaatgccaaacctaaaaatgaatctgaagtttgatatagag
gttctattcaagaaccttggttgtgatttgaaggaagtagcgccaacttcccttctaaag
gatcggaagagagaaatagatggaaatcctgattttagtaacaaagatcttggagtaaca
catatatctcaaccaccgataatccaggagcctaaaacaatttctcctcttaagcaaata
gacctacctattgatgtagcaaatacagacactccctcaaagttattatcacagtatgta
gccccacaacgtgtgtatactaatactttgatggaagacgaaaaagtggcaactttaggc
ttgcctgatcagctcccgtcacctcaaggactgttcccgtcaagtccatccccgttgttt
tctactagccagccaccagcgcttcccaacattggaaatcatgtggttatcaatcagaaa
ttaagcggatttggtacgcactttccatttccgagagtggtaccacttgccatggataga
gctatcaaagagattgtggctggtattgttcagagaagtgtttgcattgcttgccaaaca
acaaaagagcttgtactgaaggattatgccttggaaccagatgagacacgtatatatagt
gcagctcacttgatggtagcgagtttagctgggagtttggctcatgtgacgtgcaaggaa
cccctgcgcacttcaatttcaggtcatctgcggagcttgtttcaggatctgaatattaaa
aatgaagctcttgaacaaattgtgcaacttgtgaccaatgacaaccttgatctgggttgt
gctgccattgagcaggcggctacagagaaggcagtacaaactatcgacgcggacattgcc
cagcagttgttgttacggagaaagcccagagatggtgctggatcctccttatcgcaaaat
tctgtcagttttataccagagtccctccgccccaaaccgggacatctgtccctgtctcaa
cagcgagtttatgaggactttgttcaacttccttggcaaaagcagtcaatccacacttca
cacggtttatctgctgcttcaagctcgtctggtgaggttgggcttggtagtaattatggt
ccagtatcaggaaaaagtgcttcggactctttgtctggtgctgaaaacgctcggatggat
atggtctcccgggcatcagatctttctgtggagggttttgaatctccatttgcactttta
agctcacaagttgatccagctggtgaaacaggcggtcttcagttctctaattccatttcg
acttctgagttgagcctggttgaatcctccgacactgctatgaaagaaactggaacatca
ttgcagacattgacttcagctgctaccatggagcgtcttggtggaagtaatatcgctcag
ccttctctgtccacgagagatgcactggataagtatcatattgttatgcagaagatggag
gacttagtggctaataatgccggagatggtgaaattcaggttgtagtttctgaagttcct
gaaatcatcctcagatgtatcagcagagatgaagcagctctggctgtcgctcaaaaagct
ttcaaggctctttatgagaatgcatcaagtagtcttcacgtcagtgctaacctagcaatt
cttgtggctattcgtgatgtttgcaagcgtgtggttaaagagctaactagttgggtgatt
tattcagaggaggagcggaagctcaacaaggatataactatcgggcttatccaacgcgag
ttgcttaacctagcggagtacaatgtccacatggcgaagcatcttgatggagggagaaac
aagagcgccactgacttctctatttctctgctccaatccttggtcactgaggagtcgagt
gtcatttcagagctacacactcttgttgatgcactggcaaagctttcctcaaaatccgga
tctcctgagtcattgcaacaactaattgacatcatacgaaatccagttactaatacaagt
ggtctctctgatagtgcatccggaaacgagaacaatgatagacaatcgaaggatgaaaag
ctttgttctcaggttgtgtgcaatacaactgctaacacagaagagaataccagctgggaa
tatgtggtagcagatcctgcgggtttccggaatcgggtgtccacgctttttaaaaattgg
tatcaaatttgcgaagtttccggtgcaaatgataccgcttgttcacaatatgtcttgcat
ttgcatcagactggactacttaagggagatgatacaacagagagttttttcagaattctt
ctggaactctctgtcgctcattgtatatcttctgaagaaatcagttctggagctgggcaa
tctcctcagcaagctcagagtccatcattccttattatcgatatttatgcaaagctggtt
ttttcagtattgaagtatttccctgaacaggagtctagcatcaagttatttcttctttcg
gagatcatggctgtaactgtgagatctattcagaaggacgcagaagataaaaagacgtca
ctcaatccaagaccatattttagattgttcattaactggctgctggacttatgttccctg
gatcctgggactgatggagcaaactttcaggttctaacagcttttgccaatgcattccac
gcgttgcagcctcttaaggttcccgctttcagctttgcatggctagagctggtcagccac
agaagcttcatgcctaagatgcttacagtaaatggccagaagggttggccatatgtgcaa
cgcctgctggtagacttgctccagtttcttgagccatttttgagaaatgctgaactcgga
ggaccagttaatttcctatacaaagggacattgagagtgttgctggtgctgcttcatgac
ttcccggagttcctctgtgattatcattttactttctgtgatgtgattccttcaagttgc
atacaaatgcgaaatattattctcagttcttttccacggaacatgaggcttccagatccc
tctaccccaaatttgaagattgatttactgcctgagatagtagaagctccatgtatcctt
tccgaggttgatgctgtgcttaaagcgaagcaaatgaagaatgacgtggacgagtatctc
actttgaggcaacagaattcaactttcctaagtgagttgaagcagaagctgcttctctcg
tccaacgaggccagctcagctggaacccgttacaatgtaccattgatcaactcgcttgtg
ctatatactggaatgcaggctattcagcagctacaagcgggtgagacgcaggctcaaaat
gtggtggccttgcacatgttcaagtatttaagtatggaactagatacagaagggcgctac
ttgttcctcaacgcgatcgccaatcagcttcgatatcccaacaaccacactcattatttc
tccttcatcatgctctatctcttcttcgagtctaaccaggagatcattatacaggagcag
ataacaagagtgttgttggaaaggctaattgtgaaccggccgcatccttggggactccta
ataacgttcatcgagctcatcaagaatccaagatatggcttctggcaacatgccttcatc
aggtgtgctcctgagattgaaaagctctttgaatcggtcgctagatcctgtggtagtctc
aagccagtagttgacgagggaatggtctccggttgggccgacaacaatcactag
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integrated database retrieval system
