Brassica rapa (field mustard): 103844691
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Entry
103844691 CDS
T03449
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103844691
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103844691
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103844691
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103844691
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
103844691
NCBI-ProteinID:
XP_033138412
LinkDB
All DBs
Position
A10:46930..60035
Genome browser
AA seq
2379 aa
AA seq
DB search
MVMNPSKVAGHARFLLESFSDSEVDSIAQEICQLVEYGVETSIPVLKTCLDCFAARRSHP
NTSQLEKLISLVFKRVLKHSNLISHALQDVEVTDEFVADLTNALDFSISDKISFALSLAE
SDDANAAGRNLLLAMIEQLCANSAQIESTEQVQNILLFLQTSEDLSTHLTSFLQILSSTQ
PKDDFSFALTPILSQQLHQADVLRSIDFHTEFDSILAEIDKEISVGDLMGELGCGVTADA
QQCRDILSSFAPLTEATISRILANVARTCADLEDNHTTFSTFSLVLGCCIPTELSTPMSW
SVDILIETIKQLQAPGTSWRKVIENLDHSGFDIPNKESFSFFMRLYKTASQDPFPLDAVC
GSVWKNVEGQISFLKYAIASPPEVFTFMHSPRKLVYIDDNMHSHEHQLGLSNEAWLSLDL
LDVLCQLAERGHTVLVSSLLQYPLAQCPKTLLTGMTHIKTAYNLIQREVVSAILPVIITN
SQDSGFILNLWHQNTELVLWGILKAQNLKADRILNLIDICHELKVLSVVLESVPISFSIR
LAVLASLRGYLDIENWLPNVLCVYKDLFAEECLKFVKNVHFSESEDFTSQHFHPSDPLSD
VHLDATTSLLKVLKAHDNVITSSQLVDEIEKVNAAILDCNSKLQNGEAKVSSASNAYGDD
IEAEANAYFHQMFSGQLSVDAMVQMLSRYKDSSVQREKSIFDCMIANLFEEYRFFPKYPE
RQLKIASILFGSVIKHQLISSLTLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLVE
LPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESEAVSNPGPSQSFPGNGEFSGS
GIGQSALQLPLPVQSQQKNEVHINDNSRVPSVPSIEAKTLLPSSSTTSADVSVIPKNPGI
STSSLTSAGIVRPARGATSTRFGSALNIETLVAAAERRENAIEIPPSDVQDKISFIINNI
STANIESKGKEFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKEIL
QNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKSLIVEAYE
KGLMIAVIPFTSKVLEPCQMSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVLFK
NLGVDLKEVAPTSLLKDRKREIDGNPDFSNKDLGVTHISQPQIIQEPKTISPLKQIDLPL
DVADSPNTDDSSKLLSQYVAPQRVYTNTLMEDEKVSHLGLSDQLPSPQGLFPSTPSPLFS
ISQLSAALPNIGNHVVINQKLSGFALHFPFHRVVPLAMDRAIKEIVSGIVQRSVCVACQT
TKELVLKDYTLEPDETRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSLQGMNIK
NEALEQIVQLVTNDNLDLGCAAIEQAATEKAIQTIDADIDQQLSLRKKHRDGAGSSLFDP
NMLSQNSVSFIPESLRPKPGHLSLSQQRVYEDFVQLPWQKQTTQTSHGLSAASSSSGDVG
LSSSYGPASGKSASDFLSSARNARMDNVSQPLDISVEGFESPPVSLLSSQVDPAVDTAGL
QFSKSLSTSELSLVESSDTAMKETGASLQTLTSAATMERLGGNNIIQPSLSTRDALEKYH
IVTQKMEDLVANIAGDDEIQAVVSEVPEIILRCISRDEAALAVAQKAFKALYDNASSNLH
VSANLAILVAVRDVCKRVVKELTSWVIYSEEERKLNKDITIGLIQRELLNLAEYNVHMAK
YLDGGRNKSATDFSISLLQSLVTEESSVISELHSLVDALAKLSSKYGSPESLQQLIDIIR
NPVTNTSDHSNSAIGIENNDKQSKDKKVVCNTTANTEENTNLEFVESESAGFRSRVSTLF
ESWYQICEVSGANETACSQYVLHLHETGLLKGDNTTESFFRILLELSVAHCISSEEISSG
AVQSPQQAQSPSFLIIDIYAKLVFSILKYLPEQESSSKLFLLSEIMAVTVRSIQKDAEDK
KTSLNPRPYFRLFINWLLDLCSLDPGTDGANFQVLSAFANAFHALQPLKIPAFSFAWLEL
VSHRSFMPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVNFLYKGTLRVLLVL
LHDFPEFLCDYHFTFCDVIPSSCIQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAP
CILSEVDAALKAKQMKNDVDEYLALRQQNSAYLSELKQKLLLPSSEASSAGTRYSVPLIN
SLVLYTGIQAIQQLQAGETQAQNVVALHMFKYLSMELDTEGRYLFLNAIANQLRYPNNHT
HYFSFIMLYLFFESDQEIVQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKQA
FIRCAPEIEKLFESVARSCGGLKPPDEGMVSGWVSDNSH
NT seq
7140 nt
NT seq
+upstream
nt +downstream
nt
atggtgatgaacccgtccaaggtcgcaggccatgcccggttcttactcgagagctttagc
gattccgaagttgattcaatcgcccaagagatctgtcagctggttgagtatggtgttgag
acaagcattccagttctcaagacatgcttagattgcttcgccgcccgtcgaagccatcct
aatacctcgcagcttgagaaactaatatccttggtctttaaacgtgtcctgaaacactct
aatctcatttctcacgcccttcaagatgtcgaggtcactgatgagttcgtggctgatttg
actaatgctctcgacttttcaatctctgacaaaattagctttgctctgtctctagccgag
tctgatgatgcaaacgcagctggtcgaaacttattattggccatgattgagcaactgtgt
gccaattctgcccagattgagtcaaccgagcaagttcagaatattcttttgtttctccag
acatctgaggacctctccacccatcttacttccttcttacagattttgtcttctactcaa
cccaaagatgacttctcttttgctcttactcctatcctttctcaacagcttcaccaagct
gatgttttaaggagcatcgattttcacactgagtttgattctatcttagctgaaatcgac
aaggaaatttctgttggagatcttatgggagaattaggttgtggtgttactgctgatgca
caacaatgcagagatatcttgtctagtttcgcaccattaacagaggctactatctcaagg
attcttgctaatgttgctcgtacctgtgctgatctcgaagataaccacaccaccttttca
acatttagtctggtccttggttgctgcattcccactgaactttccactccaatgtcgtgg
agtgttgacatcttaattgagacaatcaagcaacttcaggctcctggcacaagctggagg
aaagtaatcgagaatcttgaccatagtggatttgatatccccaataaggagtctttctcg
tttttcatgcggctatataaaactgcttcccaggacccgtttcctcttgatgctgtatgc
ggttctgtctggaaaaatgtggaaggtcaaatatcgtttcttaaatatgcaatagcatcc
ccaccagaagtattcacctttatgcattctcccaggaagctggtatatattgacgataac
atgcacagccatgagcatcaattaggactttccaatgaagcatggctatctctcgatctc
ttagatgtcttatgccaactagctgagagaggtcatactgttttagttagttcgctgctc
cagtatccactcgcacagtgtcccaaaaccttgcttactggaatgacacacatcaaaact
gcctataatctcattcagcgagaggttgtttctgctattcttccagtgataattacgaac
tcacaggatagtggttttatccttaatctttggcatcagaatactgagcttgttctgtgg
gggattttaaaggcccaaaatctaaaagcagaccgcatactcaatttaattgatatctgc
catgaactgaaggttctttctgttgttttagaatcggttccaatctcattcagcatcaga
ttggcagtccttgcctcactgagaggctatttggacatcgagaactggttgccaaacgtt
ctatgtgtgtataaagacctctttgcggaggaatgtctcaagtttgtcaaaaatgtgcat
tttagcgaatcagaggattttacttcccaacatttccatccttctgatccgttatcagat
gttcatttggatgcaacgacttcgcttttgaaagttttgaaagctcatgacaatgtgata
acttcatctcaactggtcgatgagatagaaaaggtcaatgcagcaatcttggattgtaat
tctaaactgcagaatggtgaggctaaagtttcatcagcttcgaatgcatatggagacgat
attgaggcagaagcgaacgcttatttccatcaaatgttttcgggtcagttgagtgttgat
gcaatggttcaaatgctttcgcgatacaaggactcctcggttcaaagggaaaaatcaatt
tttgattgcatgattgctaatctgttcgaggaatatcgttttttccccaagtatcccgag
aggcagctaaaaatagcctccatcctttttggctctgttatcaagcaccagcttataagt
tctctcacacttgggatggcactgcgtttagtcttggattctttgcgtaaacctgcagat
tcaaaaatgtttctgtttggaagcaaagctctggaacagttcgtgaatcgtctggttgaa
ttgcctcagtactgtaaccatattttgcaaatatctcatctgcgtagcactcaccccgag
ttagtcactgttattgaacaagcactttcaaggatatcatctggtaatttagaatcagag
gcagtttcgaaccctggtccttcacagtctttccctggaaatggcgagtttagtggttct
ggaattggccagtctgctctccaacttcctttacctgtacagtctcaacagaaaaatgaa
gtgcacattaatgacaacagcagagtgccaagtgtgccatctatcgaagcaaagacactt
ctgccctcttcatctactacttccgctgatgtttctgtcattcctaagaatcctggtatt
tcgacttcttcattaacttcagctggtattgttcgtcccgctcgtggagccacttcgaca
aggtttgggtctgctttgaacatagagaccctggttgcagcagcagagagaagggaaaac
gcaatagagattccaccttcagatgttcaggacaaaatttctttcataatcaataatatc
tctacagccaatattgaatccaaggggaaagagttcgctgagattttgcctcaacagtac
tatccctggttcgctcagtatatggttatgaaaagagcgagcattgagcccaattttcat
gatttgtacttgaaattcttggacaaagttgattccaagctgttgtttaaggagatactt
caaaatacttacgaaaattgcaaggttctcttgggttcagagctcataaagtcaagttcg
gaagagcgatctctgctcaaaaatttaggcagttggcttggaaaattgaccattggaagg
aattatgttttgagggcgcgagaaattgatccaaaatccttaattgtggaggcatatgaa
aaagggttgatgattgcagtcattccatttacttcaaaggttctggagccatgccaaatg
agtattgcgtatcagcctcccaatccttggacaatggctatactcgggttgctcgctgag
atttattcaatgccgaaccttaaaatgaatctgaagtttgacatagaggttttattcaag
aaccttggtgttgatttgaaggaagtagcgccgacttcccttctaaaggaccggaagaga
gaaatagatgggaatcctgattttagcaacaaagatcttggagtaacacatatatctcaa
ccacagataatccaagagccgaaaacaatttctcctcttaagcaaatagacctgcctctg
gatgttgcagattcacctaatacagacgattcctcgaagttattatcacagtatgtagcc
cctcaacgtgtatatactaatactttgatggaagacgaaaaagtttcccatttaggcttg
tctgatcagcttccatcacctcaaggactgttcccgtcaactccatccccattgttttct
attagccagctgtcagcagcacttcccaatattggaaatcatgttgttattaatcagaaa
ttaagcggatttgctctgcacttcccatttcatagagtggtaccacttgccatggacaga
gctatcaaggagattgtgtctggtattgttcagcgaagtgtatgtgttgcttgccaaaca
acaaaagaacttgtgctgaaggattataccttggaaccagatgagacacgtatatataat
gcggctcacttgatggttgctagtctagctgggagtttggcccatgtgacgtgcaaggaa
cccctgcgcacttcaatatcaggtcatctacggaattcgctccaggggatgaatattaaa
aatgaagctcttgaacaaattgtgcaacttgtcaccaatgacaaccttgatttgggttgt
gctgccattgaacaggcggctacagagaaggcaatacaaactattgatgcggacattgac
cagcaattgtcgttacggaaaaagcatagagatggtgccggatcctccctttttgatccg
aacatgctatcgcagaattctgttagttttataccagagtccctccgtccaaaaccggga
catctatccctgtctcaacagcgagtttatgaggactttgttcagcttccttggcaaaag
cagacaactcaaacttctcacggtttatctgccgcttcaagctcatctggcgatgttggg
cttagtagtagttatggtccagcatcaggtaaaagtgcttcggactttttgtctagtgct
cgaaacgctcggatggataacgtctcccagccattggatatctctgtggagggttttgaa
tctcctccagtttcacttttaagctcacaagttgatccagctgttgacacggccggtctt
cagttctctaaatccctttcgacctctgaattgagcctggttgaatcctctgacaccgct
atgaaagaaactggagcatcattgcagactttgacttcagctgctaccatggagcgtctt
ggtggaaataatattatacagccttctctgtccacgagagatgcactagaaaagtatcat
attgttactcagaagatggaggacttagtggctaatattgcaggagatgatgaaattcag
gctgtagtttctgaagttcctgaaatcatcctcagatgtataagcagagacgaagctgcc
ttggctgtcgcccaaaaagctttcaaggctctttatgacaatgcatcaagtaaccttcac
gtcagtgctaacctagcaattcttgtggctgttcgagatgtttgcaagcgtgttgttaaa
gagctcactagttgggtgatatattcagaggaggagcggaagcttaacaaagacattact
atcggtcttatccaacgcgagttacttaacctagcggagtacaatgtccacatggcgaag
tatcttgatggagggagaaacaaaagcgccactgacttttctatttctctactccaatcc
ttggtcactgaggagtcaagtgtcatttcagagctacacagtcttgttgatgcactggca
aagctttcctcaaaatatggatctcccgagtcattgcaacaactaattgacatcatacga
aatccagttactaacacaagtgatcactctaatagcgcaatcggaattgagaacaatgat
aagcaatcaaaggataaaaaggttgtgtgcaataccaccgctaacacagaagagaacacc
aacttggaatttgtggaatcagagtctgcgggtttccggagtcgggtgtccacacttttt
gaaagctggtatcagatctgcgaagtttctggtgcaaatgaaaccgcttgctcacaatac
gtgttgcatttacatgaaactggactacttaagggagataatacaacagagagttttttc
cgaattcttctggaactttctgttgctcattgtatatcttctgaagaaattagttctggt
gctgtgcaatctcctcagcaagctcagagtccatcattccttatcattgatatttatgcc
aaacttgttttctcgatcttgaagtatctcccggaacaggagtcgagcagcaagttattt
cttctgtcggagatcatggctgttactgtgagatctattcaaaaagatgcagaagataaa
aagacatcactcaatccaagaccttattttaggttattcatcaattggctgctggactta
tgttccttggatcccgggactgatggtgcaaactttcaggttctatcagcttttgccaat
gcattccacgcgttgcagcctcttaagattcccgccttcagctttgcatggctagaactg
gtcagccacagaagctttatgcccaagctacttacagtaaatggccagaaaggttggcca
tatgttcaacgcctgctggtagacttgctccagtttcttgagccatttttgagaaatgct
gaactcggaggaccagttaatttcctatacaaagggacactgagagtgttgctggtgctg
cttcatgactttccggagtttctctgcgattatcattttactttctgcgatgtgattcct
tcaagttgcatacaaatgcgaaatattattctgagttcttttccacggaacatgaggctt
ccagatccatcgaccccaaatttaaagattgatttgctgccggagatagtagaagctcca
tgtatcctttctgaggttgatgctgcgttaaaagcaaagcaaatgaagaatgacgtggac
gagtatctcgctttgaggcaacagaattcagcatacctaagtgaattgaagcagaagcta
ctcctgccgtccagcgaggctagctcagctggaacccgttacagtgtaccattgatcaac
tcgcttgtgctatacactggaattcaggctattcagcagctacaggcgggtgagacacag
gctcaaaatgtggtggccttgcacatgttcaagtatttaagtatggaacttgatacggaa
gggcggtacctgttccttaatgcaatcgccaatcagcttcgatatcccaacaaccacacc
cattacttctccttcatcatgctctatctcttcttcgagtctgaccaggagatcgtacag
gagcagataacaagagtgttgctggaaaggctaattgtgaacaggccgcatccatgggga
ctcctgataacattcatagagctgataaagaatccaagatatggcttctggaaacaagcc
ttcatcaggtgtgcgcctgagattgagaaactctttgaatctgtcgccagatcctgtggt
ggtctcaagccccctgacgagggaatggtctccggttgggtctcggacaactctcattag
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integrated database retrieval system
