Brassica rapa (field mustard): 103850082
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Entry
103850082 CDS
T03449
Name
(RefSeq) probable pectate lyase 7
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103850082
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103850082
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103850082
NCBI-ProteinID:
XP_009125036
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Position
A01:29577264..29579368
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AA seq
467 aa
AA seq
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METARLLVCVICIASLIPTLRANVAETDEYWVTKANEARRRTLMAYHPDPYQIVDHFHER
HYDNSTDVEEMEENASEEEDDIEMISSATNSTRRSLRGKGKGRGKWSKLKGPCTASNPID
KCWRCQPDWARRRKKLVKCVRGFGYKTTGGKRGRIYVVTSNRDDDTVNPRPGTLRHAVIQ
NEPLWIIFKHDMSIRLCQELMINSHKTIDARGTNVHIAYGAGITMQYVHNIIIHGLHIHH
IVQGRGGMIRNSNDHFGFRGVADGDGISIFGATNIWLDHISMSKCQDGLIDAIMGSTGIT
ISNSHFTHHNDVMLLGAQNDNHADKKMQVTVAFNHFGKGLVQRMPRIRWGFVHVVNNDYT
HWELYAIGGSQSPTILSHGNRFIAPPHLQHYREVTKRDSAPESEWKNWNWRSEKDIFMNN
AYFRQSGNPKFMCSHSRQQMIKPKHGVAVSKLTKYAGALDCRVGKPC
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atggagacggctaggcttttagtttgtgtgatttgtattgccagtttgattccgacctta
cgagccaatgttgcggagacggatgagtattgggtaacaaaagccaacgaagctcgtaga
cgtacccttatggcttaccatcctgatccttatcagattgtcgaccacttccacgagcgt
cattacgacaactctactgatgttgaagagatggaggaaaacgcttcggaggaagaggac
gacattgagatgatttctagtgcgacgaacagcacaaggaggagtctaagaggtaaaggt
aaaggtagagggaaatggagcaagctaaagggaccttgcactgcaagtaaccctatcgat
aaatgttggcgttgccagccggattgggccaggcgtcgcaagaagctcgtcaagtgtgtc
cgtggattcggttacaagaccacaggaggcaaacgtggtcgaatctacgtggtcacaagc
aacagagatgatgacacggtgaaccctagacccggaacactgcgtcacgctgtgattcag
aacgaaccgctctggatcattttcaagcacgatatgagcattaggttgtgccaagagcta
atgattaatagtcacaagacgatcgatgctcgtggcactaacgtgcacatcgcatatggt
gctgggatcacgatgcagtacgtgcataatatcatcatccatgggcttcacatccatcac
atcgtccagggcagaggtggcatgataagaaactcaaatgaccactttgggttcagagga
gtggccgatggagatggtatctccatctttggagcaacaaacatttggcttgaccacatt
tctatgtctaaatgccaagatggtctcatcgacgctataatgggctccaccggtatcact
atctctaactctcatttcacccaccacaacgacgtgatgttgcttggtgcacaaaatgac
aaccacgcggacaagaagatgcaagtcactgtggctttcaaccactttggtaaaggactt
gtgcagaggatgccgaggattcggtggggtttcgtccatgttgtcaacaatgactacact
cactgggagctttacgctatcgggggtagccaaagtcctaccattctcagccacggaaac
cgtttcatcgctcctcctcacctacaacattacagagaagtgacaaagagggattctgct
ccagaatcggagtggaaaaactggaactggagatctgagaaagacattttcatgaacaat
gcatatttcagacagtctggaaacccaaagttcatgtgttcacactctagacaacagatg
ataaagcccaaacacggtgttgccgtttcaaagcttaccaaatacgccggagcattggat
tgccgggtcggaaaaccatgctaa
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