Brassica rapa (field mustard): 103850259
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Entry
103850259 CDS
T03449
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
brp
Brassica rapa (field mustard)
Pathway
brp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103850259
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
brp03019
]
103850259
Messenger RNA biogenesis [BR:
brp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103850259
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103850259
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
CNOT1_TTP_bind
DUF3819
ARM_Cnot1
CNOT1_HEAT
NOT1_connector
WEF-hand
vATP-synt_E
Motif
Other DBs
NCBI-GeneID:
103850259
NCBI-ProteinID:
XP_009125224
LinkDB
All DBs
Position
A07:17248498..17261482
Genome browser
AA seq
2378 aa
AA seq
DB search
MSMIPSKVAVHTRYLLDNFNDSDVDSIAQEICQLVDYGVEASIPVLKTCVDCFTVRRSHA
NTLQLEKLLALVFKRVLKLPNLGTLLSHALQDADVTPEFVRDLATALGFSVSDKITFALA
LVDFETSHAKTSGRNLLLAEIEQLCANNGQVESTEQIQNVVLFLQTSEDLSGHLESFLRL
LSSSQPRDDLSFALTPLLSPFRSIDSAEDDFDAVLAEIDKEVGVGDLIGELGCGFTADAQ
QCKHFLSSFAPLREATISRILGHVARTSADLEDNHTTFSTFSLAVGCSIPTDLPTPTPTS
WNVDILIETIKQLQAPGTSWRKVIENLDHSGFDIPNMESFSFFMRLYKTACKDPFPLDAV
CASVWNNMEGQLSFLKHAIAAPPEVFTFTHSPRKLAYIDNIMHSHEQQLGLSNQAWLSLD
LLDVLCQLAERGHTVLVSSMLQYPLTHCPKTLLLGMTHIKTAYNLIQREVVSVILPVLIT
NSQDSGFILKLWHQNAELVLWGILNAQNLKSDGILRIIEIFHELKIFSVVLESVPVSFSI
RLAVLASLRGFLDIENWLPNCLYVYKDLFAEECLKFVKNVHFSESEDFTSKHFHPSDPLS
DRHLDATTLLLKVLKAHDNVITSSQLVEEIEKVNSAILDCNSKLQNGEAKDSSVPSPYGE
DVEEEANAYFHQMFSGQLSVDAMVQMLSRYKDSLVQREKSIFECMIANLFEEYRFFPKYP
ERQLKIASVLFGSVIKHQLISSITLGMALRLVLDSLRKPADSKMFLFGSKALEQFVNRLV
ELPQYCNHILQISHLRSTHPELVTVIEQALSRISSGNLESDASFSHPGPSQSLPGNGEFS
VSGIGQSPLQLPSPVQPQQKNEVHIDDHSKVPSVPSIETKPLLPSSSSTSADVSVIPKNP
GISTSSLTSAGFVRPARGATSTRFGSALNIETLVAAAERRENAIEAPPSDVQDKISFIIN
NISIANIESKGKEFAEILSQQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKVDSKLLFKE
ILQNTYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNYVLRAREIDPKSLIVEA
YEKGLMIAVIPFTSKVLEPCQNSIAYQPPNPWTMAILGLLAEIYSMPNLKMNLKFDIEVL
FKNLGVDLKEVVPTSLLKDRKREIDGNPDFSNKDLGVAHISQSQMISEPKTISPLKQIDL
PLDVANSSNTDAPSKLLSQYVAPQRAYTNTSVEDEKVVTLGLSDQLSSPQGPFQSTPPFS
VSQLSAALPNIGNLVVINQKLSGFSKHFPFQRVVPLAMDRAIKEIVSGIVQRSVCIACQT
TKELVLKDYASEPDETRIYNAAHLMVASLAGSLAHVTCKEPLRTSISGHLRNSLQGPNIN
NEALEQIVQLVTNDNLDLGCAAIEQAATEKAIQNIDADIAHQLSLRRKHRDGVGSSFFDP
NMLAQNSVSFIPESLSPKPGQLSLSQQRVYEDFVQHPWQKQSAQTSHGLSVASSSSGDVG
FGNGYGPVSGKNASDFESSAGNDRTDMAYRASDTSMESFQSCPISLLSSQVDPAAGLQFS
KSLSTSELSLVESSEAAMKETGTSLQTLTPAATMERLIGNNTPQPSLSTRDALDKYHIVT
QKMENLVANNAGDDEIQAVVSEVPEIILRCISRDEAALAVAQKAFKALYENASSNLHISA
NLAILVAIRDVCKRVVKELTSWVIYSDEERKLNKDITIGLIQRELLNLAEYNVHMAKHLD
GGRNKSATDFSISLLQCLVTEKSSVISELHSLVDALAKLSAKSGSPVSLQQLIDIIRNPV
TNTSGLSDSATENEINDRQSKDEKVVCNTIANTEDNTSFEYVESGSTDFRKRVSTLFENW
YQLCEVSGANETACSEYVLHLYQTGLLKGDDTTESFFKILLELSVAHCISSEEISSGAAQ
SPQQAQSPSFLIIDIFAKLVFSILKYFPEQESSSKFFLLSEIMAVTVRSIQKDAEDKKAS
LSPRPYFRLFINWLLDLCSLDPGTDGANFQVLTAFANAFHALQPLKIPAFSFAWLELVSH
RSFLPKLLTVNGQKGWPYVQRLLVDLLQFLEPFLRNAELGGPVHILYKGTLRVLLVLLHD
FPEFLCDYHFTFCDVIPSSCVQMRNIILSSFPRNMRLPDPSTPNLKIDLLPEIVEAPCIL
SEVDAALKANQMKNDVEEYLTSRQHDTTFLNELKLKLLVSSSEASSAGTRYNVPLINSLV
LYTGMQAIQQLQQAGETGAQNVVALHMFKYLSAELDTEGRYLFLNAIANQLRYPNNHTHY
FSFIMLYLFLESDQVVIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYGFWKHGFI
RCAPEIEKLFESVARSCGCLKPLDEGIVSAGWVSENSH
NT seq
7137 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatgattccgtccaaggtcgccgtccatacccggtacttactcgataacttcaat
gattccgatgtcgactcaatcgcccaagagatctgccagttggttgattatggtgttgag
gcaagcatccctgtgctcaagacgtgcgtagattgcttcaccgtccggagaagccacgct
aatacgctgcagcttgagaaactattagccttggtcttcaaacgtgtcctcaaattgcct
aatctcggaaccctgctttctcacgcactccaagatgctgacgtcactcctgaattcgtt
cgtgatttggcaactgctttgggcttttcagtctctgataagattacctttgctcttgcc
ctggttgattttgaaacttctcatgctaagactagtggacgaaacttattattggcggag
attgagcaactctgtgctaacaatggccaggttgagtcaactgagcaaattcagaacgtt
gttttgtttcttcagacgtccgaggatctctccgggcatttggagtcgttccttcggctt
ctgtcttcctctcaacctagagatgacttgtcttttgctcttacgcctctcctctctcca
ttcaggagcattgattctgctgaggacgactttgatgctgtcctagctgaaatcgataag
gaagttggtgttggagatctcattggagaattaggctgtggtttcactgctgatgcccaa
caatgcaaacacttcttgtctagtttcgcacccctaagagaggctactatctcaagaatt
cttggtcatgtggctcgtacctctgccgatcttgaagataatcacaccaccttttcaaca
ttcagtctggccgttggttgctccattccaactgatctgcccacgccaacgccaacgtcg
tggaatgttgatatcttgattgaaacaatcaagcagcttcaggctcctggcacaagctgg
aggaaagtaatcgagaatctcgaccatagtggatttgacatccctaatatggagtcattc
tcgtttttcatgcggctatataaaactgcttgcaaggacccatttcctcttgatgctgta
tgtgcttctgtctggaacaatatggaaggtcaattatcctttcttaaacatgcaatagca
gctccaccagaagtatttacctttacgcattctccaaggaagctggcatatattgataat
atcatgcacagccatgagcaacaattaggactttccaatcaagcatggctatctcttgat
ctcttagatgtactctgccaactggcggagagaggtcatactgttttagttagttcgatg
ctccagtatccactcacacattgtcctaaaacattgcttcttggaatgactcacatcaaa
actgcctataatctcatccagcgagaggtggtatctgttattcttccagtgctaataacg
aattcccaggatagtggtttcattctcaagctctggcatcagaatgctgagctcgttctg
tgggggattttaaatgcccaaaatcttaaatcagacggcatactcagaataattgaaatc
ttccatgagcttaagattttctctgttgttttagaatcagttccagtctcattcagcatc
agattggcagtccttgcctcactgagaggctttttggacattgagaactggttgccaaac
tgtctgtatgtgtataaggacctctttgctgaggagtgtctcaaatttgtcaagaatgtg
cattttagcgaatcagaggattttacttccaagcattttcatccttcggatcctttatca
gatcgtcatttggatgcaacgactttgcttttgaaagttttgaaagctcatgacaatgtg
attacttcatctcaactagtcgaagagatagaaaaggtcaattcagcaatcttggattgt
aattcgaaactgcagaatggggaggctaaagattcctcagttcccagtccatacggagaa
gatgttgaggaggaagccaacgcttatttccatcaaatgttttccggtcagttgagtgtt
gatgcaatggttcaaatgctatctcgatacaaggactctttggttcaaagggaaaaatca
atttttgaatgcatgattgctaatctgttcgaggagtatcgttttttccccaagtatccc
gagaggcagctgaaaatagcctccgtcctctttggttctgttattaagcaccagcttatt
agttccatcacactggggatggcactgcgtctagtcttggattctttgcgtaagcctgca
gattctaaaatgtttctgtttggaagcaaagctctggaacagttcgtgaatcgtcttgtt
gaattgcctcagtactgcaaccatattttgcaaatatctcacctgcgtagcactcatccc
gagttagtcactgttattgaacaagcactttcaaggatatcatctggtaatttggaatca
gatgcttcgttttcgcaccctggtccttcacagtctctccctggaaatggcgagtttagt
gtttctggaattggtcagtctccactccaacttccttctcctgtacagcctcaacagaaa
aatgaagtgcatattgatgaccacagcaaagtgccaagtgtgccatctatcgaaacaaag
ccacttctgccctcgtcatctagcacttctgctgatgtttctgtcattcctaagaatcct
ggcatttcgacttcttcactgacctcagctggttttgttcgtccagctcgtggagccaca
tcaacgaggtttggctctgctttgaacatagaaaccctggttgcagcagcagagagaagg
gaaaacgcaatagaggctccaccttcagatgtccaggacaaaatatctttcataatcaat
aatatctctatagctaacattgaatctaaagggaaagagttcgctgagattttatctcaa
caatactatccttggttcgcacagtatatggttatgaaaagagcgagcatcgagcccaat
tttcacgatttgtacttgaagttcttggacaaagttgattccaagctgttgtttaaggag
atactccaaaatacatacgaaaattgcaaggttctgttgggttcagagctcataaagtca
agttctgaagagcgatctctgcttaaaaatttaggcagctggcttggaaagttaacgatt
ggaaggaattatgttttaagggcgcgagaaattgatccaaaatccttgattgtggaggcg
tatgaaaaagggttgatgatagcagtcattccattcacttcgaaggttctggagccatgc
caaaacagtattgcgtatcagcctcccaatccttggacaatggctatactcgggttgctt
gctgagatctattcgatgccaaacctaaaaatgaatctgaagtttgacatagaggttctg
ttcaagaaccttggtgttgatttgaaagaagtagtgccaacttcccttctaaaggatcgg
aagagagaaatagacgggaatcctgattttagtaacaaagatcttggagtagcacatata
tctcagtcccagatgatctcggagcctaaaacaatttctcctcttaagcaaatagatcta
cctcttgatgttgcaaattcatctaatacagacgctccctcgaagttattatcacagtat
gtagcccctcaacgtgcttatactaatacttcggtggaagacgaaaaagttgtaactcta
ggcttgtctgatcagctctcgtccccacaaggaccgttccagtcgactccacccttttct
gttagccagctgtcagcagcacttccgaacattggaaatcttgttgttatcaatcagaaa
ttaagcggatttagtaagcactttccatttcagagagtggtaccacttgccatggacaga
gccatcaaggagattgtgtctggtattgttcagcgaagtgtttgtattgcttgccagaca
acaaaagagcttgtgctcaaggattatgcctcggaaccagatgagacacgtatatataat
gcagctcacttgatggttgctagtttagctgggagtttggctcatgtgacgtgcaaggaa
cccctgcgcacttcaatttcgggtcatctacgtaattcgctacagggtccgaatattaat
aatgaagctcttgaacaaattgttcaacttgtcaccaatgacaaccttgatttgggttgt
gctgccattgagcaggcggctacagagaaggcaatacaaaatattgatgcggacattgcc
catcaattatcgttgcggagaaagcatagagatggtgttggatcctccttttttgatcca
aacatgctagcgcaaaattctgtcagttttatacctgagtccctcagcccaaaaccggga
caattgtccctttctcaacagcgagtttatgaggactttgttcaacatccttggcaaaag
cagtcagcccaaacttcacacggtttatccgttgcttcaagctcatctggcgatgttggg
tttggtaatggttatggtccagtatcaggaaaaaatgcttcggacttcgagtctagtgct
ggaaatgatcggacggatatggcctaccgggcatcagatacttctatggagagttttcaa
tcctgtccaatttcacttttaagctcacaagttgatccagcagccggtcttcaattctct
aaatccctttcgacatctgaattgagcctggttgagtcctccgaggccgctatgaaagaa
actggaacatcattgcaaacgttgactccagctgctaccatggagcgtcttattggaaat
aataccccacagccttctctgtccacgagagatgcattggacaagtatcatattgttact
cagaagatggagaacttagtggctaataatgcaggagatgatgaaattcaggctgtagtt
tctgaagttcctgaaatcatcctcagatgtataagcagagatgaagcagctttagctgtt
gctcaaaaagctttcaaggctctttatgagaatgcatcaagtaaccttcacatcagtgct
aacctagcaattcttgtggctattcgtgatgtttgcaagcgtgttgttaaagagctcact
agttgggtgatttattcagacgaggaacggaagctcaacaaagatattactattggtctt
atccaacgcgagttgcttaacctagcggagtacaatgtccacatggcgaagcatcttgat
ggagggagaaacaagagcgccactgacttttctatttctctactccagtgccttgtcact
gagaagtcgagtgtcatttcagagctacacagccttgttgatgcactggccaagctttcg
gcaaaatctggatctcccgtctcattgcaacaactcattgacatcatacgaaatccagtt
actaacacaagtggtctcagtgatagtgcaactgaaaacgagatcaatgataggcaatca
aaggatgaaaaggttgtatgcaataccatcgctaacacagaagataataccagctttgaa
tacgtggaatcaggctctacggatttccggaaacgggtgtccacgctttttgaaaactgg
tatcaactctgcgaagtttcgggtgcaaatgaaaccgcttgttcagaatatgtcttgcat
ttgtatcagactggacttcttaagggagacgatacaacagagagttttttcaaaattctt
ctggaactgtctgttgctcattgtatatcttctgaagaaattagctctggtgctgcgcaa
tctcctcagcaagctcagagtccatcattcctcatcatcgatatttttgcaaagcttgtt
ttttcgatcttgaagtatttccctgaacaagagtctagcagcaagttttttcttctgtcg
gagatcatggctgtcactgtgagatctattcaaaaggacgcagaagataaaaaggcatca
ctcagtccaagaccatattttagattgttcatcaactggctgctggacttatgttccctg
gatcctgggactgatggtgcaaactttcaggttctaacagcttttgctaatgcattccac
gcattgcagcctttgaagattcccgctttcagctttgcatggctagagctggtcagccac
agaagcttcttgcccaagctacttacagtaaatggacagaagggctggccatatgttcaa
cgcctgctggtagacttactccagtttcttgagccatttttgagaaatgcggaactcgga
ggaccggttcatatcctatataaggggacgctgagagtgttgctggtgctgcttcatgac
ttcccggagttcctctgcgattatcattttactttctgtgatgtgattccttcaagttgc
gtacaaatgcgaaatattatactaagttcttttccacggaacatgaggcttccagaccca
tctaccccaaatttaaagattgatttgctgcctgagatagtagaagctccgtgtatccta
tctgaggttgatgctgcgctaaaagcaaatcaaatgaagaatgacgtggaagagtatctc
acttcgaggcaacatgatacaactttcctaaatgagttgaagctgaagctacttgtctcg
tccagcgaggctagttcagctggaactcgttacaatgtaccattgatcaactcgcttgtg
ttatatactggaatgcaggctattcagcagctacaacaggcgggagagacaggggctcaa
aatgtggtggccttgcatatgttcaagtatttaagtgcggaacttgacacggaagggcgg
tatctgttcctaaatgcaatcgccaatcagcttcgatatccaaacaaccacactcattac
ttctccttcatcatgctctatctcttcttggagtctgaccaggtggtcatacaggagcag
ataacaagagtgttgctggaaaggctaattgtgaacaggccgcatccatggggactcctg
ataacattcatagagctcataaagaatccaaggtatggcttctggaaacatggcttcatc
aggtgtgctcctgagattgagaaactctttgaatcggtggccagatcatgtggttgtctc
aagccccttgacgagggaattgtctccgccggttgggtctcggaaaactctcattag
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integrated database retrieval system
