Brassica rapa (field mustard): 103856110
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Entry
103856110 CDS
T03449
Name
(RefSeq) probable pectate lyase 19
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103856110
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103856110
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103856110
NCBI-ProteinID:
XP_009131435
UniProt:
A0A398A022
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Position
A03:2869875..2872310
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AA seq
475 aa
AA seq
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MVMARLLKLMLVLCIVGLIPTIRADMSELDEYWSGRADEAREFTLQAYHSDPYEIIDHFH
ERHYDNSTDVTPTEEDNNTKPEEVENEVIEMVGSGDNSTNSTRRSLRGKGKGKWSKLKGP
CTASNPIDKCWRCRKNWSKRRKKLVKCVRGFGHMTVGGKHGRIYVVTSNLDEDMVNPEPG
TLRHAVIQKEPLWIIFKNDMSIRLNQELLINSFKTIDARGANVHIAHGAGVTMQFVRHVI
IHGLHIHHISESSGGMIRDSADHFGMRTRADGDGLSIYGSSNIWLDHVSMSQCQDGLIDA
IVGSTAITISNSHFTHHNDVMLLGAQNTYDLDKKMQVTVAYNHFGKGLVQRMPRIRWGFV
HVVNNDYTHWELYAIGGSQSPTILSQGNRFIAPPHLPHYREVTKRDYAPEEEWKHWNWRS
EKDIFMNGAYFRQSGDPNYETDHTRRNMIKPKNGYAVSKLTKYAGALDCRVGRRC
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atggttatggctaggctgttaaagttgatgttagtgttatgtattgttggtctgatcccg
accatacgagccgacatgtctgagttggacgaatattggtcgggacgagctgatgaagcc
cgagaattcactcttcaagcttatcattctgatccttatgaaatcatcgatcactttcac
gaacgtcactacgacaactctactgatgttacaccgaccgaggaagataacaacacgaag
cctgaagaggtggaaaacgaggtcattgaaatggtcggatccggagataactcgacgaac
agcacgagacgaagcttaagaggtaaaggcaaaggaaaatggagtaagctcaagggaccg
tgtaccgcaagtaaccctatagataaatgttggcgttgccgtaagaactggtctaagcgt
cgcaagaagcttgtcaaatgtgtacgcgggttcggacacatgacggtcggtggtaaacat
ggacgcatctacgtggtcacaagcaacctcgacgaggacatggtgaaccctgaacccggg
acgttgcgtcacgccgtgattcagaaggagcctctctggatcattttcaagaacgatatg
agcattcgtttaaaccaagagcttctgattaatagcttcaagactatcgatgcgcgagga
gctaatgtccatatcgcgcatggcgcgggggtcacgatgcagttcgtgagacatgttatt
atccatgggttgcatattcaccatatatctgagagtagcggtggtatgatccgtgactcg
gcagaccattttggaatgaggactagagccgatggagacggtttgtctatatacggttcg
tctaacatttggcttgaccatgtctccatgtcgcaatgtcaagatggactcattgatgcc
attgttggatccactgccattacaatctccaactctcacttcactcaccacaacgacgtg
atgttgcttggtgctcaaaacacttatgacttagacaaaaagatgcaagtcacagtggct
tataaccattttggtaaaggactagtgcagaggatgccaaggatcaggtggggatttgtt
catgttgtgaacaatgactacactcattgggagctttacgctatcggaggcagtcaaagt
ccaacaattctcagccaaggaaaccgattcattgctcctccacacttacctcattacaga
gaggtgacaaagagagactatgctccggaagaagagtggaaacactggaactggagatct
gaaaaagatatattcatgaatggagcttattttagacaatctggagatcctaattatgaa
actgatcacaccagacgaaacatgattaaaccgaaaaatggatacgctgtttcaaagttg
accaaatacgcaggagcacttgattgcagagtcggaagacgctgttag
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