KEGG   Brassica rapa (field mustard): 103856292
Entry
103856292         CDS       T03449                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
brp  Brassica rapa (field mustard)
Pathway
brp03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:brp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103856292
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:brp03019]
    103856292
Messenger RNA biogenesis [BR:brp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103856292
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103856292
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965
Other DBs
NCBI-GeneID: 103856292
NCBI-ProteinID: XP_009131642
LinkDB
Position
A03:complement(3600743..3606014)
AA seq 847 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY
RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ
PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKSRPPRLTHLETSITRH
KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV
EGLEDLVTAGPLVKGTPLSMKSSVAASASQVRSISLPTHHQSTSQEKTDDTTLPDSNSET
LPKTPPQKNGALHSAPSTPVGERPSLNVPVSSVPNAPVALSTSIPVQTSSESMGSLSPVA
AKEEDATTLPSRKPTSSVADAPPRGIGRVNIPTQPQLSQPLSPSPAKGARMSATSAAEVA
KRNIMGVESNVQPLTSPLSKMVLPPAVKGNDGTVSDSNPSDVAASIGRAYSPSIVSGSQW
RPGSPFQSQNETVRGRTEIVPDQRENYLQLYQQLQQGHGNLLGMASLSGGNEKQFSSQQQ
NPLLQQSSGISPHGGSGIQAPGFNVMSSASLQHSSNAMTQQFGQQPSGADVDHARNDDQL
QQNLPDDSTSMAASKTIPNEDDSKGLFDNPSGMPSYMLDQVQVTRDGPDFSPGQPIQPGQ
PSSSHGVIGRRSNSELGTIGEPSALGPMNDQMHNLQMLEAAFYRLPQPKDSERPRPYTPR
NPAITPQSFPQTQAPIVSNPLFWERLGSDAFGTEPLFFAFYYQQNSYQQYLAAKELKKQS
WRYHRKFNTWFQRHKEPTIATDEYEQGAYVYFDFQTPKDENRDGGWVQRIKNEFTFEYSY
LEDELAV
NT seq 2544 nt   +upstreamnt  +downstreamnt
atgggagcgagtcggaagctacaaggcgagatagatcgggtgctgaagaaggttcaggaa
ggtgttgatgtcttcgacagcatctggaacaagtggaatgtctatgatacggataatgtt
aaccaaaaggaaaagtttgaggctgacttgaagaaggagattaagaagctgcagcggtat
agggaccagatcaagacttggattcagtctagtgagatcaaagataaaaaagtgagtgca
tcatatgagcaatccctggttgacgctcggaagctcattgagcgagaaatggagaggttt
aaaatatgtgagaaagagaccaagacaaaagcattctctaaggaaggactgggtcagcaa
cctaaaactgaccccaaagagaaagcaaagtcagaaacaagagattggttgaacaatgtg
gtgagtgaactcgagtcgcagattgatagctttgaagctgagttggaaggactatctgtc
aaaaaaggaaagtcaaggccgcccagattgacacatctcgagacatctatcacaagacac
aaggatcatataataaagttggaattgatattgaggcttctggacaatgatgaattaagt
ccagaacaagtaaatgacgtcaaagattttctggatgattatgttgaacgaaatcaggat
gattttgacgaattcagtgatgttgatgagctctatagcacgttgccactagatgaggtg
gagggtcttgaagatctagtaactgctggccccctcgtcaagggtactcctctgagcatg
aagagttctgtggcagcgtcagcatctcaagttcggagcataagtttgccaacacaccat
cagagcacttctcaagagaagactgacgatacaactttaccggatagcaattctgagaca
cttccaaaaacccctccccaaaagaatggggcccttcactcagcaccatcaacacccgtt
ggggaacgtccaagtttgaatgtgcccgtcagtagtgttccaaatgcaccagttgcttta
tcaacttccattcctgttcagacttcctcagaaagcatgggaagtttgtctccagtggcg
gccaaggaagaagatgcaacaaccttgccttcccgtaaaccaacctcatctgttgctgat
gctccaccgaggggaattggtagagttaatatccccacacagccccaactaagtcagcct
ttgtctccaagtccagctaaaggagctcgcatgagtgctacttcagcagctgaagttgca
aagagaaatataatgggagttgagagcaatgtccaacctctaacctctccgctcagcaaa
atggtattaccaccagctgtgaagggtaatgatggaactgtctctgatagtaaccctagt
gatgttgcggcaagcattggtagagcttattcaccgtctattgtatctggttcgcagtgg
aggcctgggagtccctttcagagtcagaatgaaacggtccgtggaagaactgaaatagta
ccagatcaaagggagaattacttacagctgtaccagcaactacaacaaggccatggtaac
ctcttaggcatggcttctctatccggaggaaacgagaagcagttttcttcacaacagcaa
aatccgcttttacagcagagctctggcatctctcctcatggtggctcgggaattcaggca
ccagggtttaatgtcatgagttctgcctccttgcagcactcgtcaaatgccatgactcaa
caatttggtcagcagccttctggtgcagatgtagatcatgccagaaatgatgatcagctg
caacaaaacttacctgatgattcaacttccatggcagcttcaaaaactattccaaacgag
gatgattctaaaggtctatttgataatccgtcgggaatgcccagctacatgttggatcaa
gtacaggtaactagggacggccctgatttctctcccggacaacccatacaacccggccaa
ccttcaagtagccacggggtcattggacgtagaagtaactctgaactaggaactattggt
gaaccttcagctttagggccaatgaacgatcagatgcacaatctccagatgcttgaagct
gctttctacagacttcctcaacccaaagattcagaacgtcctagaccctatactccgagg
aacccagcaatcacacctcaatcatttccccaaacacaagcgccaatcgtaagcaaccct
ttgttctgggaacgtttaggcagcgatgcttttggaaccgagcctttgttctttgcattt
tactatcagcagaactcgtatcagcagtatctagctgcaaaagagctgaagaaacagtca
tggagataccacagaaagttcaacacgtggtttcaaagacataaggagccaacgattgca
actgatgagtatgaacaaggagcctatgtatactttgatttccaaaccccaaaagacgag
aatcgagatggtggatgggttcaaaggatcaaaaacgagttcacgtttgaatacagttat
cttgaagatgaactcgccgtatag

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