Brassica rapa (field mustard): 103859732
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Entry
103859732 CDS
T03449
Name
(RefSeq) probable pectate lyase 16
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103859732
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103859732
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103859732
NCBI-ProteinID:
XP_009135558
UniProt:
M4DAS5
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Position
A01:complement(6660287..6666719)
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AA seq
393 aa
AA seq
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MTPFFILCLSVTLFLCQSLVGAINNGYYGYNPVASYLPEKPQNIMNPVDSCWRLKSDWTA
NRKDLADCAVGFGSSALGGKKGNIYVVTNPNDNAANPQPGSLRYGVIQDKPLWITFAKDM
VLTLENELMVNSYKTIDGRGTKVEIAYGPCITIQEVTNVIVHGISIHHCKPGKYGMVRSS
TTHVGHRKGSDGDAIAISGSSNIWIDHCYLASCTDGLIDVIHASTGITISNNYFTQHDKV
MLLGHNDDFVQDVKMKVTVAFNHFGPGLVERMPRVRRGYAHVANNRYDKWIMYAIGGSAD
PTIFSEGNYFIASDNSNSKEVTKREVKGGWNNWRWRTSKDVFKNGAYFVPSGYGSVALPY
SSAQRFPVAPGNLVPSLTAGAGPLNCYRNRPCY
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgactcctttcttcattttgtgtctctccgtgacacttttcttatgtcagtccttggtt
ggagccattaacaacggctattacgggtataacccggtggccagctacctacccgagaaa
cctcagaacatcatgaatccggtggactcgtgttggcggctcaagtctgactggacggcc
aaccgcaaagatttagccgattgtgcggttgggtttggttcatctgccttgggcggcaag
aaaggcaatatatatgttgtcaccaaccctaatgataatgcagcgaaccctcaacccggt
tctctgcgatacggtgtgatccaagacaagccgctgtggatcactttcgctaaggatatg
gtcctaaccttagagaatgagctcatggtcaatagctacaagaccatcgatgggagaggg
acaaaagtggaaattgcgtacggaccttgcattacgatacaagaagtgacgaacgtaatt
gtgcacgggatcagtatccaccactgcaaaccgggtaagtacggaatggtgaggagtagc
acaacgcacgtaggtcatcgaaagggatcggacggtgatgctatcgcgatttccggttcg
tctaatatttggatcgaccattgttacctagcgagttgtacggacggtcttatcgatgtg
attcatgcttccacgggaataactatttccaacaactattttactcagcatgataaagtg
atgttgcttggacacaacgatgatttcgtgcaggatgtgaaaatgaaagtgaccgttgca
ttcaatcattttggaccaggacttgtggagagaatgccaagggtccgacgagggtacgct
catgtggcaaacaatagatacgataaatggataatgtatgcaattggtggtagcgccgat
ccaaccattttcagtgaaggcaactatttcattgcttctgataattctaacagcaaggag
gtgacaaagagagaagtgaaaggagggtggaacaattggagatggagaacttcaaaagac
gttttcaagaacggcgcttacttcgttccttctggttacggcagcgttgcgcttccatat
agttctgctcagcgattcccagtcgctccagggaacttggttccttctctaaccgcaggc
gctggccctcttaactgttaccgcaaccgcccatgttattag
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