Brassica rapa (field mustard): 103867588
Help
Entry
103867588 CDS
T03449
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp04120
Ubiquitin mediated proteolysis
brp04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103867588
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
103867588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
brp04121
]
103867588
Enzymes [BR:
brp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103867588
Ubiquitin system [BR:
brp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103867588
Multi subunit Ring-finger type E3
Cul4 complex
Target recognizing subunit (DCAF)
103867588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
zf-C3HC4_2
zf-C3HC4
WD40_like
zf-C3HC4_3
zf-RING_2
zf-RING_UBOX
zf-C3HC4_4
U-box
zf-RING_5
YbfN
YpoC
DUF1664
zf-RING_10
zf-RING_6
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
103867588
NCBI-ProteinID:
XP_009143915
LinkDB
All DBs
Position
A05:complement(6418358..6422154)
Genome browser
AA seq
677 aa
AA seq
DB search
MEEIRKDPLVPAVKPDPRASSIGEGPNHRHENDEGGSGGLEIGAPDLDKDLLCPICMQVI
KDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARHVSKT
ASPLDQFRDALQRGCDVSIKEVDNLLTLLAEKKRKMEQEEAERNMQILLDFLHCLRKQKV
DELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAWPLEKSHTGF
NSNSLSIRGGNPSGNFQNKKVVEGKAQGSSHGISKKDAQSGSDSQSLNQSSVSMARKKRI
HAQFNDLQECYLQKRRQLVDQPHTNQESDNSVVRREGYSHGLADFQSVLTTFTRYSRLRV
IAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADIQCPIVEMS
TRSKLSCLSWNKHEKNHIASSDYEGIVTVWDVTTRQSLMEYEEHEKRAWSVDFSRTEPSM
LVSGSDDCKVKVWCTRQEASVLNIDMKANICCVKYNPGSSNFIAVGSADHHIHYYDLRNI
SQPLHVFSGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNLPVRTFRGHTNEKNFVGL
TVNSEYLACGSETNEVYVYHKEITKPVTSHRFGSLDMEEAEEEAGSYFISAVCWKSDSPT
MLTANSQGTIKVLVLAA
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggaagagattaggaaggatccgctagttccggctgtgaaacccgatccgagagcctcc
tccatcggagaaggccccaaccaccgccacgaaaacgacgaaggaggaagcggtggtttg
gagattggagctccggatctggataaggacttgctctgtccgatttgtatgcaggttata
aaggacgctttcctcacggcgtgtggacatagcttctgctacatgtgcatcatcacgcac
cttaggaacaagagcgattgtccctgttgtagccagcacctcacaaataatcagctttac
cctaacttcttacttgataagctgttgaagaaaacttcagctcggcatgtgtcgaaaact
gcatcgcctttggatcagtttcgggacgcattacaacggggttgtgatgtgtcaattaaa
gaggttgataatctgctgacacttcttgcggaaaagaagaggaaaatggaacaggaagaa
gctgagaggaacatgcagatactcttggactttttgcattgtctgaggaagcagaaagtt
gatgaacttaatgaggtgcaaactgatcttcagtatattaaagaagacataaatgcagtt
gagagacatagaatagatttgtaccgtgctcgggataggtactctgtgaagttacgaatg
ctcggagatgatccaagcacacgaaatgcatggcccctcgagaagagtcacaccggcttc
aactccaattctctgagcataagaggagggaatccatcaggcaattttcaaaacaaaaag
gtagtagagggaaaggcacaaggaagctctcacgggatatcgaaaaaggatgcacagagt
ggatcagattcccagagtttgaatcagtcatctgtctcaatggccaggaagaaacggatc
catgctcagttcaacgatctacaagagtgttacctccaaaagcggcgtcagttggtagac
caaccacatactaatcaagaaagtgataatagtgtagtacgtagggaaggatacagccac
ggccttgcagattttcaatctgtgctcactacctttactcgctacagtcgtctgagagtt
atagcggagatccggcatggggatatatttcattcagccaacattgtatcaagcatagag
tttgatcgtgatgatgagctcttcgccactgctggtgtttctagatgtataaaggttttt
gacttctcttcggttgtcaatgaaccggcagatatacagtgtccgattgtggagatgtca
actcgctccaaacttagttgtttgagttggaataagcatgagaaaaaccatatagcaagc
agtgattatgaaggaatagtaactgtgtgggatgtaaccactagacagagtcttatggag
tatgaagagcacgaaaaacgtgcctggagcgttgacttttcgcgaacagaaccatctatg
cttgtgtctggtagtgacgattgtaaggttaaagtttggtgcacaaggcaggaagcaagt
gtgcttaacattgatatgaaagcaaacatttgttgtgtcaagtacaatcctggctcaagc
aacttcattgcggtcggatcagctgatcatcacatccattactacgatttaagaaacata
agccaaccacttcatgtcttcagtggacacaagaaagcggtctcctatgtgaagtttttg
tccaacaacgagcttgcgtctgcgtctactgatagcacactacgcttatgggatgtcaag
gacaacttgccagttcggacatttagaggacacactaatgagaagaactttgtgggtcta
acagtgaacagcgagtatctcgcctgcggaagcgagacaaatgaagtatatgtatatcac
aaggagatcacgaaacctgtgacatcgcataggtttggatcactagacatggaggaagca
gaggaagaggcgggttcatactttattagtgcggtttgctggaagagcgatagtcccacg
atgctgactgcgaatagccaaggaaccatcaaagttctggtactcgctgcttga
DBGET
integrated database retrieval system
