Brassica rapa (field mustard): 103870710
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Entry
103870710 CDS
T03449
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103870710
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103870710
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
103870710
NCBI-ProteinID:
XP_009147117
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Position
A05:26340301..26344795
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AA seq
416 aa
AA seq
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MAVTKLIFFASALLVTTLFIGVNSSRSNETWHEHAVEKPEEVAAMVDMSIRNSTERRRLG
YFSCATGNPIDDCWRCDRKWQLRRKRLADCSIGFGRNAIGGRDGRYYVVTDPNDDDPVTP
VPGTLRHAVIQNEPLWIVFKRDMVITLKQELIMNSFKTIDGRGVNVHIANGACLTIQYVT
NIIVHGIHIHDCKPTGNAMVRSSPSHYGWRSMADGDAISIFGSSHIWIDHNSLSNCADGL
VDAVMSSTAITVSNNFFTHHNEVMLLGHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRH
GYFHVVNNDYTHWEMYAIGGSAGPTINSQGNRFLAPVNPFAKEVTKREYTGQSKWKHWNW
RSEGDLFLNGAFFTRSGAGAGAGYARASSLSAKSSSLVGTMTSYSGALNCRAGRRC
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggctgtcacaaaacttatcttctttgcttcggcattacttgtaacaacgctgtttatc
ggcgttaattcatccaggtcgaatgaaacatggcatgaacatgcagttgagaaaccagag
gaagtagctgccatggtggacatgagcattcgcaacagcacggagcggagacgcttaggc
tacttctcctgcgccaccggcaacccaatcgacgactgctggcgctgcgaccgcaaatgg
cagctccgccgcaaacgcctcgccgactgctcgatcggattcggccgcaacgcgatcggc
ggccgcgacggccgctactacgtcgtgaccgaccccaacgacgacgatcccgtcaccccc
gtcccgggaacgctccgccacgccgtgatccagaacgagccgctctggatcgtcttcaag
cgcgacatggtcataaccctaaagcaggagctgatcatgaacagcttcaagaccatcgac
ggccgcggcgtcaacgtccacatcgccaacggcgcgtgcctcacgatccagtacgtgacc
aacattattgttcatgggattcatattcatgattgtaagcccacgggtaacgcgatggtg
agaagctcaccgtcgcattacgggtggagatcgatggctgatggtgacgccatctccatc
tttgggtcgagtcatatttggattgatcataactcgctctcgaattgcgctgatgggctt
gtggatgccgttatgagctccactgcgattacggtctctaacaacttcttcactcaccac
aatgaggttatgttgttggggcatagtgattcatacacaagggacaaagtgatgcaagtt
acaattgcttacaaccattttggtgagggtcttatccagagaatgccaaggtgtaggcat
ggatacttccatgtagtgaacaacgactacacacactgggaaatgtatgctattggtggt
agtgctggtccgactatcaacagtcaggggaatcgatttcttgccccagtaaacccattt
gctaaggaggtgactaagagggagtacacgggacaatcaaaatggaagcactggaattgg
agatcagaaggagatcttttcttaaacggagcatttttcacacggtctggggctggagct
ggagccggctacgccagagcttcgagtttgtcggccaaatcatcctcactcgtaggcacc
atgacctcttactctggtgctcttaactgcagagccggtcgcaggtgttaa
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