Brassica rapa (field mustard): 103873738
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Entry
103873738 CDS
T03449
Name
(RefSeq) probable pectate lyase 22
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
brp
Brassica rapa (field mustard)
Pathway
brp00040
Pentose and glucuronate interconversions
brp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
brp00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103873738
Enzymes [BR:
brp01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103873738
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103873738
NCBI-ProteinID:
XP_009150377
UniProt:
M4FBZ8
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Position
A06:complement(18780935..18783218)
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AA seq
413 aa
AA seq
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MNTMLNSSHASFALIFLYCIFFFALALSSPVSDPELIVEEVHRKINESISRRNLGYFSCE
TGNPIDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPKPGTL
RYAVIQDEPLWIIFSRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIH
GLHIHDCKQGGNTDVRDSPEHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIR
GSTAITISNNYLTHHNKVMLLGHSDTYEQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHV
VNNDYTHWEMYAIGGSANPTINSQGNRFLAPDNSFSKEVTKHEDAPESEWSRWNWRSEGD
LMLNGAFFTLSGAGPTKSSSYSRASSLAARPSSNVGEITISSGALSCKKGSHC
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgaacacaatgctaaattcctcacatgcatcctttgcacttatctttctctactgcatt
ttcttcttcgcactcgctttgtcctcgccagtttccgaccccgagctcatcgttgaggaa
gtccacaggaaaataaacgagtctatatcaagaaggaacttaggatacttttcgtgtgag
accggtaatccgatcgacgattgttggcgatgcgacaaagactgggagaaaaaccggaaa
cggttagctgattgcggaatcggttttggaaaaaacgcaattggtggtcgtgatggtgaa
atttacgtggtcaccgatccaggtaacgatgatccagtaaaccctaaaccgggaacacta
agatacgcagtcattcaagatgaacctctttggatcatattcagccgagacatgacgatc
caactaaaagaagaactcataatgaactctttcaaaactctagacggacgaggagcatca
gtccacatatctggtgggccgtgtataacaatacaatatgtgacaaacatcatcatccac
ggtttacacatacatgactgtaagcaaggtgggaatactgacgtacgagattctccagag
cactacgggtggcggacgatatccgacggtgacggtgtttcgatcttcggtgggagccac
gtgtgggttgatcattgctcgctctcgaattgtaacgatgggttgattgatgctatccgt
ggatccacggctataacgatttctaataattacttgacgcatcacaataaggttatgtta
ttgggacatagtgatacgtacgaacaagacaagaatatgcaagtcactatcgcttttaac
cattttggagaaggcctcgtccaacgaatgccaaggtgtcgacatggatatttccatgtg
gtgaacaatgactatacacattgggaaatgtatgcaattggaggaagtgctaatcctacc
atcaactctcaaggcaaccgttttcttgctcctgataactcttttagcaaagaggtaaca
aagcatgaggatgctcccgaaagcgaatggagtcgttggaattggagatccgaaggagat
ctaatgcttaacggtgcattctttacactttctggagctggaccaactaaatcgtcaagc
tattcgagagcctcaagcctagctgctagaccgtcttctaatgttggtgagataactata
tcatctggtgcactcagctgcaaaaagggttcccactgctga
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