Bradyrhizobium amphicarpaeae: CIT40_19040
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Entry
CIT40_19040 CDS
T05700
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
brq
Bradyrhizobium amphicarpaeae
Pathway
brq03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brq00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CIT40_19040 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brq03021
]
CIT40_19040 (rpoB)
03400 DNA repair and recombination proteins [BR:
brq03400
]
CIT40_19040 (rpoB)
Enzymes [BR:
brq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CIT40_19040 (rpoB)
Transcription machinery [BR:
brq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CIT40_19040 (rpoB)
DNA repair and recombination proteins [BR:
brq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CIT40_19040 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
AWM01925
UniProt:
A0A2U8PWN7
LinkDB
All DBs
Position
complement(4442325..4446443)
Genome browser
AA seq
1372 aa
AA seq
DB search
MAQQTFTGRKRVRKFFGHIKEVAEMPNLIEVQKASYDQFLMVDEPQGGRLDEGLQAVFRS
VFPISDFSGTSMLEFVRYEFEQPKYDVDECRQRGMTFAAPLKVTLRLIVFDIDEETGAKS
VKDIKEQDVYMGDIPLMTMNGTFIVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFA
ARVIPYRGSWLDIEFDAKDIVYARIDRRRKIPVTSLMFALGLDGEAILSTFYKKILYKRT
KEGWRVPFDANRFRGYSTVNDLIDADTGKVVLEAGKKLTVRAARQLQEKGLKALRLADEE
LVGNYIAEDLVNPKTGEIHAEAGEEITDKSMKVLSEHGYKELPLLDIDHVNIGPYIRNTL
SADKNMTREDALFDIYRVMRPGEPPTLDSAQAMFQSLFFDAERYDLSAVGRVKMNMRLDL
DAPDTQRTLRKEDILSVIKTLVDLRDGKGEIDDIDHLGNRRVRSVGELMENQYRIGLLRM
ERAIKERMSSVDIDTVMPQDLINAKPAAAAVREFFGSSQLSQFMDQTNPLSEITHKRRLS
ALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFARVNKYGFVETPY
RKVKDGRVTDEVVYLSAMEEGRYTVAQANVPLDPKGRFTEDLVVCRHAGEVLPVTPDKVD
YMDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQAVPLVRAEAPFVGTGMEGVVARD
SGAAIAARRSGVIDQIDATRVVIRATEDLDPTKSGVDIYRLMKYQRSNQSTCINQRPLVK
VGDIVKKGDIIADGPSTDLGELALGRNVLVAFMPWNGYNFEDSILLSERIVKEDVFTSIH
IEEFEVMARDTKLGPEEITRDIPNVSEEALKNLDEAGIVYIGAEVRAGDILVGKITPKGE
SPMTPEEKLLRAIFGEKASDVRDTSLRVPPGVQGTIVEVRVFNRHGVDKDERALAIEREE
IERLAKDRDDEQAILDRNVYNRLAELLEGRQGIAGPKGFKKDTKITRAVLEEYPKSQWWL
FASPNDKLMAEIEAMRKQYDESKKGLEQRFLDKVEKLQRGDELPPGVMKMVKVFVAVKRK
IQPGDKMAGRHGNKGVVSKIVPIEDMPFLEDGTHADIVLNPLGVPSRMNVGQILETHLGW
ACAGLGKRIGQTVDAYLSKQDIKPLKETLKKVYGEDETIKSLNDNELIELGHNLSRGVPI
ATPVFDGAKEADIEEMLKLAGLDASGQSTVYDGRTGDAFDRKVTVGYIYMLKLHHLVDDK
IHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVAGRT
KVYEAIVRGDDTFEAGIPESFNVLVKEMRSLGLNVDLHNSKVGPASTSEAAE
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagcagacattcaccggtcgcaaacgcgttcgcaagttcttcggacacatcaag
gaagtcgcagagatgccgaacctcatcgaggttcagaaggcgtcctatgaccagttcctg
atggtcgatgaaccccagggggggcgtctcgacgaaggtctgcaggcggtattccgctcg
gtcttcccgatttccgacttctcgggcacctcgatgctggaattcgtccgctacgagttc
gagcagccgaaatatgacgtcgacgagtgccgccagcgcggcatgaccttcgcggctccg
ctcaaggtgacgctgcgcctcatcgtgttcgatatcgacgaggaaaccggcgcgaagtcg
gtcaaggacatcaaggagcaggacgtctacatgggcgatatcccgctcatgacgatgaat
ggcaccttcatcgtcaacggcaccgagcgcgtcatcgtctcgcagatgcaccggtcgccc
ggcgtgttcttcgaccacgacaagggcaagacccattcgtcgggcaagctgctgtttgcc
gcccgcgtgatcccgtatcgcggttcctggctcgacatcgagttcgacgccaaggacatc
gtctatgcgcgtatcgaccgtcgccgcaagattccggtgacgtcgctgatgttcgcgctc
gggctggacggcgaggcgatcctgtccaccttctacaagaagatcctctacaagcggacc
aaggaaggctggcgcgttccgttcgacgccaaccgtttccgcggctactcgaccgtcaac
gacctgatcgacgccgataccggcaaggtcgtgctcgaggccggcaagaagctcactgtt
cgtgccgcccgtcagctccaggaaaaggggctgaaggcgctgcgcctggccgatgaggaa
ctggtcggcaattacatcgccgaggacctcgtcaacccgaagacgggtgagatccacgcc
gaagccggcgaggaaatcaccgacaagtcgatgaaggtgctcagcgagcacggctacaag
gagctgccgctcctcgacatcgaccacgtcaatatcggcccctacatccgcaacacgctc
tcggccgacaagaacatgacgcgcgaggacgcgctgttcgacatctaccgcgtgatgcgt
ccgggcgagccgccgacgctggattcggcgcaggccatgttccagtcgctgttcttcgac
gccgaacgctacgacctctccgcggtcggccgcgtcaagatgaacatgcggctcgacctc
gatgcgcccgacacccagcgcacgctgcgcaaggaagacatcctctccgtcatcaagacg
ctggtggatttgcgcgacggcaagggcgagatcgacgacatcgaccatctcggcaaccgc
cgcgtgcgctcggtcggcgagctcatggagaaccagtaccgcatcggcctgctgcgcatg
gagcgcgcgatcaaggagcgcatgtcctcggtcgacatcgacacggtcatgccgcaggac
ctgatcaacgcgaagccggcggctgccgccgtgcgcgagttcttcggctcctcgcagctc
tcgcagttcatggaccagaccaacccgctcagcgagatcacccacaagcgccgcctctcg
gcgcttggaccgggcggtctgacccgcgagcgcgcaggcttcgaagtccgcgacgtgcat
ccgacgcattacggccgcatctgcccgatcgagacgccggaaggcccgaacatcggcctg
atcaactcgctcgcgaccttcgcgcgcgtgaacaagtacggtttcgtcgagacgccgtat
cgcaaggtcaaggacggccgcgtcaccgacgaggtcgtgtacctctcggcgatggaagag
ggccgctacacggtcgcgcaggccaacgtgccgctcgacccgaagggccgtttcaccgaa
gacctcgtggtctgccgtcatgccggcgaagtcttgccggtgacgcccgacaaggtcgac
tacatggacgtgtcgccgaagcagctcgtttcggtcgcagcagccctgatcccgttcctc
gagaacgacgacgccaaccgcgcgctgatgggctcgaacatgcagcgccaagcggtgccg
ctggttcgcgccgaggcgccgttcgtcggcaccggcatggaaggcgtggttgcccgcgac
tcgggtgccgcgatcgcggcgcgccgctcgggcgtgatcgaccagatcgacgccacccgc
gtcgtcatccgcgcaacggaagatctcgatccgaccaagtcgggcgtcgatatctaccgt
ttgatgaagtaccagcgctccaaccagtcgacctgcatcaaccagcgtccgctggtgaag
gtcggcgacatcgtcaagaagggcgatatcatcgccgacggtccgtcgaccgatctcggc
gaactcgctctcgggcggaatgtgctcgtcgcgttcatgccgtggaacggctacaacttc
gaagactcgatcctgctctccgagcggatcgtgaaggaagacgtcttcacctcgatccac
atcgaggagttcgaggtgatggcccgcgacaccaagctcgggcccgaggaaatcacccgc
gacattccgaacgtgtcggaagaagcgctgaagaacctcgacgaagccggtatcgtctac
atcggcgcggaagtgcgcgcgggcgacatcctggtcggcaagatcacgccgaagggcgag
agcccgatgacgccggaagagaagctgctgcgcgccatcttcggcgaaaaggcctccgac
gttcgcgacacctcgctgcgcgttcctcctggcgtgcagggtacgatcgtggaagtgcgc
gtgttcaaccgtcacggcgtcgacaaggacgagcgtgcgctggcgatcgaacgggaagag
atcgagcgtctggccaaggaccgcgacgacgagcaggcgatcctggaccgcaacgtctac
aaccgtcttgccgagctgctcgagggacggcagggcattgccggtccgaagggcttcaag
aaggacaccaagatcacccgtgcggtgctcgaggagtacccgaagtcgcagtggtggctg
ttcgcctcgccgaacgacaagctgatggccgagatcgaggccatgcggaagcagtacgac
gagtcgaagaaggggctggaacagcgcttcctcgacaaggtcgagaagcttcagcgcggt
gacgaattgccgcccggcgtgatgaagatggtcaaggtcttcgtcgcggtgaagcgcaag
atccagcccggcgacaagatggccggccgccacggcaacaagggcgtggtgtcgaagatc
gtgccgatcgaggacatgccgttcctcgaagacggcacgcatgccgatatcgtgctcaat
ccgctcggcgtgccctcgcgcatgaacgtcgggcagattctcgagacccatctcggctgg
gcctgcgccggcctcggcaagcgtatcggccagacggtcgatgcctatctgtcgaagcag
gacatcaagccgctgaaggaaaccttgaagaaggtctacggcgaggacgagacgatcaag
tcgctcaacgacaacgaactgatcgagctcggccacaacctcagccgcggcgtgccgatc
gcgacgccggtgttcgacggcgccaaggaagccgacatcgaggagatgctgaagcttgcc
ggtctggacgcttcgggccagtcgaccgtctatgacggccgcaccggcgatgcgttcgat
cgcaaagtgactgtgggctacatctacatgctcaagctgcaccatctggtcgacgacaag
atccacgcgcgttcgatcggtccgtactcgctcgtcacccagcagccgctgggcggcaag
gcgcagttcggcggccagcgcttcggcgaaatggaggtgtgggcgctcgaggcttacggc
gcggcgtacacgctccaggagatgctgacggtgaagtcggacgacgtcgccggccgtacc
aaggtgtacgaggcgatcgtgcgcggcgacgacacgttcgaggccggtattccggaatcg
ttcaacgtgctggtcaaggaaatgcgctcgctcggcctcaacgtcgacctgcacaactcc
aaggtgggaccggcgtcgacgtcggaagctgccgagtaa
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