Brachybacterium sp. SGAir0954: C1N80_12210
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Entry
C1N80_12210 CDS
T06008
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
brr
Brachybacterium sp. SGAir0954
Pathway
brr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
brr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C1N80_12210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
brr03400
]
C1N80_12210 (mfd)
Enzymes [BR:
brr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C1N80_12210 (mfd)
DNA repair and recombination proteins [BR:
brr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
C1N80_12210 (mfd)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
AAA_19
AAA_30
RecG_dom3_C
UB2H
PBP_like_2
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
QCR54260
UniProt:
A0A4P8TJN0
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All DBs
Position
complement(2713792..2717364)
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AA seq
1190 aa
AA seq
DB search
MTPTAPLAPLLDLIADGRDLTAIRELVTTGTADGSGGDMVAATGLFPFAVADLARASSAE
SPLVVVTPTTRAAEDLRSALGALVGTEHLAELPAWETLPHERLSPRADTVARRLATLRRI
AHPETERPVHVLLMPVRSLLQPIAAGLGDLRPVRAAVGDTYALEDLEQDLVDAAYARVDM
VEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEVDDVRYFSVADQRSLDPAPHGLDAPPC
REILLTPAVRERARAMAEDLPGVAEMLQRIAAGIAVDGMESLSAVLVEEMQQVADVLPAG
ARFLLMEPEKIRARAAELVATTDEFLAAAWSSAAAGGGLPIDVGAASFVPLSEAKGHARA
GGRPWFTLAAFGLETDVDLTATTATTHPGYSGKPGDAAQDLERRRKDGWRIIATLTGQGS
ARHASENLRAEGLPAVYADHLEGPVAEGEAVVTVGPFPEGLVDEDAKVLLASERDLTGKS
GARRGEERRMPARRRNVVDPLQLRPGDFVVHSHHGVGRFVEMTSRTVGAGAKATTREYLV
IEYSASKKGQPGDRLYVPSDQLDQVTKYVGGEEPSVNRMGGADWAKTKSRARKAIREIAD
ELVRLYSARQSAPGHAFAPDTPWQRELEDAFEFIETPDQLSALDDVKRDMEKSVPMDRLI
LGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLAQQHLDTFTERYTGFPVTVKGLSRF
QSAADSQATIDGLLDGSVDVVIGTHRLLTGQVRFKDLGLLIIDEEQRFGVEHKETLKALR
TDVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGVQEDKQVTAAIRREL
LREGQVFYVHNRVEDIDRVAAHLRELVPDARVQVAHGKMNEHQLERVILDFWEREFDVLV
CTTIVETGLDIANANTLIVENADRFGLSQLHQLRGRVGRSSERAYAYFLYNATKPLTETA
HDRLTTLATNTDLGAGMRVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVAAF
RGESTAPEKEIRVELPVDAHLPHDYIPSERLRLEAYSKLSAVREVSEIEQVAAELVDRYG
PLPEPVSLLLDVARFRIDARAAGIDEVQAQGKMIRFAHIEPADSVAMRMKRLFPGTMLKP
AVRQVLVPRPTTARFGGTELRDHALLDWAREVMRTLVPAAAEQISRSDGE
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgacccccaccgccccgctcgccccgctgctcgacctgatcgccgacgggcgcgacctc
accgcgatccgcgagctcgtcaccaccgggacggccgacggcagtggcggcgacatggtc
gcggcgaccgggctgttccccttcgccgtcgcggacctcgcgcgcgcctcgagcgccgag
agcccgctcgtcgtcgtcaccccgacgacgcgcgccgccgaggacctccgctccgcgctc
ggcgccctcgtgggcaccgagcacctcgccgagctccccgcctgggagacccttccccac
gagcgtctctccccgcgcgcggacaccgtcgcccggcgcctcgcgacgctgcggcggatc
gcgcatcccgagaccgagcgtcccgtgcacgtgctgctcatgcccgtgcgctccctgctc
cagccgatcgccgcgggcctcggcgacctccggccggtccgcgccgcggtgggggacacc
tatgccctcgaggacctcgagcaggacctcgtcgacgccgcctatgcgcgcgtggacatg
gtggagaagcggggggagttcgccgtgcgcggcggcatcctcgacgtcttcccgcccacg
gagccgcacccggtgcgcgtggacctcttcggcgacgaggtggacgacgtccgctacttc
tccgtcgccgaccagcgctccctggatccggccccgcacggtctcgacgccccgccctgc
cgggagatcctgctgaccccggccgtgcgcgagcgcgcccgggcgatggcggaggacctc
cccggtgtcgccgagatgctccagcgcatcgccgcgggtatcgccgtggacggcatggag
tccctgagcgccgtgctcgtcgaggagatgcagcaggtggcggacgtcctccccgccggc
gcgcgcttcctgctcatggagcccgagaagatccgcgcccgcgccgcggagctcgtcgcg
acgacggacgagttcctcgcggcggcctggtcgagcgccgccgccggcggagggctcccg
atcgacgtgggcgccgcgagcttcgtcccgctctccgaggcgaagggccacgcccgcgcg
ggcggccggccctggttcacgctcgccgccttcggtctcgagacggacgtcgacctcacg
gccacgaccgcgaccacgcatcccggctactcggggaagcccggggacgccgcccaggac
ctcgaacgccgtcggaaggacggctggcgcatcatcgcgacgctcaccggccagggctcc
gcccgccacgcgagtgagaacctgcgcgcggaggggctgcccgccgtctacgcggaccac
ctcgaggggccggtcgccgagggcgaggccgtggtcaccgtcggcccgttccccgagggt
ctcgtcgacgaggacgcgaaggtcctgctcgcctccgagcgcgacctcacgggcaagtcc
ggtgcccgccgcggcgaggagcggcgcatgcccgcgcgccgccgcaacgtggtggacccg
ctgcagctgcggcccggcgacttcgtcgtgcactcccatcacggcgtgggccggttcgtc
gagatgacgagccgcaccgtgggcgcgggggcgaaggccacgacccgcgagtacctcgtc
atcgagtactcggcctcgaagaagggccagcccggcgaccgcctgtacgtcccgagcgac
cagctcgaccaggtcacgaagtacgtcggcggcgaggagccgagcgtcaaccgcatgggc
ggcgcggactgggccaagacgaagtcccgcgcccgcaaggcgatccgggagatcgccgac
gagctcgtgcgcctgtactcggcgcggcagtccgcgccgggccacgccttcgccccggac
acgccgtggcagcgggagctcgaggacgccttcgagttcatcgagaccccggaccagctc
tccgccctcgacgacgtcaagcgggacatggagaagtcggtgccgatggaccggctcatc
ctcggcgacgtcggttacgggaagacggagatcgccgtgcgcgcggccttcaaggccgtc
caggacggcaagcaggtcgccgtgctcgcgcccacgaccctcctcgcccagcagcacctc
gataccttcaccgagcggtacacgggcttccccgtgaccgtgaagggcctcagccgcttc
cagtccgcggcggactcgcaggcgacgatcgacggtctgctcgacggctccgtcgacgtc
gtgatcggcacccatcgcctgctcaccgggcaggtgcgcttcaaggacctcgggctgctc
atcatcgacgaggagcagcgcttcggcgtcgagcacaaggagacgctcaaggcgctgcgg
accgacgtcgacgtgctcgccatgtcggccacaccgatcccgcgcacgctcgagatggcg
gtcacgggcatccgcgagatgtcgaccctcgcaacgccgccggaggagcgccacccggtg
ctcacctacgtcggcgtccaggaggacaagcaggtcaccgccgcgatccggcgcgagctg
ctgcgcgagggccaggtgttctacgtgcacaaccgggtcgaggacatcgaccgggtcgcc
gcgcacctgcgcgagctggtccccgacgcccgcgtccaggtcgcccacggcaagatgaac
gagcaccagctcgagcgcgtcatcctcgacttctgggagcgggagttcgacgtcctcgtg
tgcaccacgatcgtggagacggggctggacatcgcgaacgcgaacacgctcatcgtggag
aacgcggatcgcttcggcctctcgcagctgcaccagctgcggggccgcgtgggccgctcg
agcgagcgcgcctacgcctacttcctctacaacgccacgaagccgctcaccgagacggcc
cacgaccggctcacgaccctcgcgacgaacaccgacctcggcgcgggcatgcgggtcgcg
atgaaggacctcgagatccgcggtgcgggcaacctgctgggcggcgagcagtccggccac
atcgccggggtgggcttcgacctctacgtgcggatggtgggggaggccgtcgcggccttc
cgcggcgagtcgaccgcgccggagaaggagatccgcgtcgagctccctgtggacgcgcac
ctcccgcacgactacatcccctccgagcggctgcggctcgaggcgtactcgaagctctcg
gcggtgcgggaggtctccgagatcgagcaggtcgcggccgagctcgtggaccgctacggc
ccgctgccggagccggtgtccctgctcctggacgtcgcgaggttccggatcgacgcccgc
gccgccggcatcgacgaggtgcaggcccagggcaagatgatccgcttcgcgcacatcgag
cccgcggactcggtcgcgatgcgcatgaagcggctgttccccgggacgatgctcaagccg
gccgtgcggcaggtgctcgtgccgcggccgacgaccgcgcgcttcggcggcaccgagctg
cgcgaccacgcgctgctcgactgggcgcgcgaggtcatgcgcaccctcgtgccggccgcc
gccgagcagatctcgcggtccgacggcgagtga
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