Brachybacterium avium: CFK39_04355
Help
Entry
CFK39_04355 CDS
T04950
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
brv
Brachybacterium avium
Pathway
brv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFK39_04355 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brv03021
]
CFK39_04355 (rpoC)
03400 DNA repair and recombination proteins [BR:
brv03400
]
CFK39_04355 (rpoC)
Enzymes [BR:
brv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFK39_04355 (rpoC)
Transcription machinery [BR:
brv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFK39_04355 (rpoC)
DNA repair and recombination proteins [BR:
brv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFK39_04355 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
ASK65188
UniProt:
A0A220UAK0
LinkDB
All DBs
Position
complement(946324..950208)
Genome browser
AA seq
1294 aa
AA seq
DB search
MIDVNTFDELRIGLATADDIRGWSHGEVKKPETINYRTLKPEMDGLFCERIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTKSSVRRERMGHVELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYMITAVDEQARHDDMPDLQARFDLEAKELENERDAAINQRALSAEKD
LAQLEEEGAKADAKRKVRDSGEREQAQIRKKYDAEIDRITRIWERFKTLKVADLEGDEQL
YRAMKLRYGTYFEGGMGAEALQRRLQDFDLEAESVLLREIIATGKGQKKARALKRLKVVS
AFLTTTNSPVGMVLEAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQESVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVNGPQLNLHQCGLPKGMALELFKPFVMKRLVELSHAQNVKAAKRMVERAR
PEVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPAQDMIIGLYHLTTVREDCEGAGR
RFASEAEAIMAFDRGELHLNAPVSIRFTDIAPPSDWEAPEGWTEGDPIILATTLGTVYFN
ETLPVDFPFVQGQVGKKRLGGIVNALAERYDKGQVAASLDALKSYGFSWSTRSGASFALS
DVVTPPNKPEIIAKYEAKSAQIQENRDLGLISEHERNMELIDIWTEATNEVDQAMRENFD
STNTIYRMVDSGARGNWMQVRQIAGMRGLVNNPKGEIIPRPILSNYKEGLSVLEYFIASH
GSRKGLADTALKTAQSGYLTRRLVDVSQDVIVREDDCGTTKGLVLPIAVEEGGVLRPHEH
AESTVYGRVLATAAIGADGSEAAPAGTELGDVLIEQLVEAGVREAKIRSVLTCDSAVGTC
AQCYGKSLATGQLVDIGEAVGIVAAQSIGEPGTQLTMRTFHSGGVASADGDITHGLPRIQ
ELFEARTPAGFAPISEFAGRAEIEENDKQRRITVTPDDGSEPVSYTVSKRVTLLIADGDQ
IDVGQQLTQGSVDPKQVLRILGPRKVQQHLVDEVQKVYISQGVDIHAKHIEVIVRQMLRR
VTVIESGDTGLLPGDFAERVTFERENRRVLSEGGQPASGRPELMGITKASLATESWLSAA
SFQETTRVLTEAALNRKSDQLMGLKENVIIGKLIPAGTGLSRFRHIAVEPTEEAKAQMYQ
VPGYDELDFSGFGQTGAVNLDDIDYADPFRTDFR
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgacgtcaacaccttcgacgagctgcgcatcggcctcgccactgccgatgacatc
cgcggctggtcccacggcgaggtcaagaagccggagaccatcaactaccgcaccctgaag
cccgagatggacggcctcttctgcgagcgcatcttcggccctacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgtttcaagggcatcatctgcgagcgctgcggcgtg
gaggtcaccaagtcctccgtgcgccgtgagcgcatggggcacgtggagctcgccgctccc
gtcactcatatctggtacttcaagggcgtgccgagccgcctcggttacctgctggacctc
gcgccgaaggatctcgagaagatcatctacttcgccgcgtacatgatcaccgccgtggac
gagcaggctcgccacgacgacatgcccgatctgcaggcacgcttcgatctcgaggccaag
gagcttgagaacgagcgcgacgccgcgatcaaccagcgggcgctgtccgcggagaaggac
ctcgcccagctcgaggaggagggcgccaaggccgacgcgaagcgcaaggtccgcgactcc
ggtgagcgcgagcaggcgcagatccgcaagaagtacgacgccgagatcgatcgcatcacc
cgcatctgggagcgcttcaagaccctcaaggtcgcggacctcgagggcgacgagcagctc
taccgggcgatgaagctgcgctacggcacctacttcgagggcggcatgggcgccgaggcg
ctccagcgccggctccaggacttcgaccttgaggccgagtccgtgctgctgcgcgagatc
atcgccaccggcaagggacagaagaaggcccgggcgctcaagcgcctcaaggtcgtctcg
gcgttcctgaccaccaccaactcgcccgtcggcatggtgctggaggccgtcccggtgatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctc
aacgacctgtaccgtcgcgtgatcaaccgcaacaaccgtctcaagcggctgctggatctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggagtcggtcgactcg
ctgttcgacaacggccgccgcggccgtccggtcaccggaccgggcaaccgcccgctgaag
tcgctctcggacatgctcaagggcaagcagggacgtttccgtcagaacctgctgggcaag
cgtgtggactattccgctcgctccgtgatcgtcaacggcccgcagctgaacctgcaccag
tgcggtctgcccaagggcatggcgctggagctgttcaagcccttcgtcatgaagcgtctg
gtcgagctcagccacgcccagaacgtcaaggccgccaagcggatggtggagcgtgcgcgc
cccgaggtgtgggacgtcctcgaagaggtcatcaccgagcacccggtgctgctgaaccgt
gcgcccaccctgcaccgcctgggcatccaggcctttgagccgcagctggtggagggcaag
gccatccatctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggcgaccag
atggccgtgcacctgccgctgtccgcggaggcgcaggccgaggcccgcatcctgatgctg
tccagcaacaacatcctcaagccgtccgacggccgacccgtgaccatgcccgcacaggac
atgatcatcggcctgtaccacctcaccacggtccgcgaggactgcgagggcgccgggcgc
cggttcgcctccgaggcggaggccatcatggccttcgaccgcggcgagctgcacctgaac
gccccggtgtcgatccgcttcacggacatcgcgccgccgagcgactgggaggcccccgag
ggctggaccgagggcgacccgatcatcctggccaccaccctcggcaccgtctacttcaac
gagacgctgcccgtggacttccccttcgtgcagggccaggtcggcaagaagcgactgggc
ggcatcgtcaacgctctcgccgagcgctatgacaagggccaggtcgcggcctcgctggac
gcgctgaagtcctacggcttctcgtggtccacccgctcgggcgcgtccttcgcgctgtcc
gacgtggtgactccgccgaacaagccggagatcatcgcgaagtacgaggccaagagcgcc
cagatccaggagaaccgtgacctgggcctgatctccgagcacgagcgcaacatggagctc
atcgacatctggaccgaggcgaccaatgaggtcgaccaggcgatgcgtgagaacttcgac
tcgaccaacaccatctaccggatggtggactcgggtgcgcgaggcaactggatgcaggtc
cgtcagatcgccggtatgcgtggtctggtgaacaaccccaagggcgagatcatcccccgc
ccgatcctctccaactacaaggaggggctctcggtcctggagtacttcatcgcctcgcac
ggctcccgcaagggcctggcggacaccgcgctgaagaccgctcagtcgggctacctgacc
cgccgtctggtcgacgtctcgcaggacgtcatcgtccgcgaggacgactgcggcaccacc
aagggccttgtcctgccgatcgctgtcgaggagggcggagtgctgcgcccccacgagcat
gcggagtccacggtgtacgggcgcgtcctggccaccgcggccatcggggccgacggctcc
gaggcggcgccggccggcaccgagctgggtgacgtgctcatcgagcagctggtcgaggcc
ggtgtgcgggaggcgaagatccgttcggtgctgacctgcgactcggcagtgggcacctgt
gcccagtgctacggcaagtcgctcgcgaccggccagctggtcgatatcggcgaggccgtc
ggcatcgtcgcggcgcagtcgatcggtgagcccggcacccagctgaccatgcgtaccttc
cactccggtggtgtggccagcgccgacggcgacatcactcacggtctgccccgtatccag
gagctcttcgaggcacgtaccccggccggcttcgcgccgatctcggagttcgccggtcgc
gcggagatcgaggagaacgacaagcagcgtcggatcacggtcaccccggacgacggctcg
gagccggtgtcgtacaccgtctccaagcgtgtgaccctgctgatcgccgacggcgaccag
atcgacgtcggccagcagctcacccagggctcggtcgatccgaagcaggtgctgcgcatc
ctcggcccgcggaaggtgcagcagcacctggtggacgaggtgcagaaggtctacatcagc
cagggtgtggacatccacgccaagcacatcgaggtcatcgtgcgccagatgctccgtcgg
gtgacggtcatcgagtccggcgacaccggtctgctgcccggcgacttcgccgagcgggtc
accttcgagcgggagaaccgtcgggtgctctccgagggcggtcagccggcctcgggtcgt
cccgagctgatgggcatcaccaaggcgtcgctggcgaccgagtcgtggctctcggcggcc
tccttccaggagaccacccgcgtgctcaccgaggccgccctgaaccgcaagagcgatcag
ctcatggggctcaaggagaacgtcatcatcggcaagctcatcccggcaggcaccggcctg
tcgcggttccgccacatcgcggtcgagcccaccgaggaggccaaggcgcagatgtaccag
gtgcccggctacgacgagctggacttctccggcttcggccagaccggtgccgtcaacctc
gacgacatcgactacgccgacccgttccgcacggacttccggtga
DBGET
integrated database retrieval system
