Brachybacterium avium: CFK39_04360
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Entry
CFK39_04360 CDS
T04950
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
brv
Brachybacterium avium
Pathway
brv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
brv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFK39_04360 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
brv03021
]
CFK39_04360 (rpoB)
03400 DNA repair and recombination proteins [BR:
brv03400
]
CFK39_04360 (rpoB)
Enzymes [BR:
brv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFK39_04360 (rpoB)
Transcription machinery [BR:
brv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFK39_04360 (rpoB)
DNA repair and recombination proteins [BR:
brv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFK39_04360 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
ASK65189
UniProt:
A0A220UAM2
LinkDB
All DBs
Position
complement(950329..953817)
Genome browser
AA seq
1162 aa
AA seq
DB search
MAASSTDRTTDIALRTASPRVTFAKLGDPIEVPDLLSLQTTSFDWLLGNERWQERAAEAS
AAGREDVPQASGLADILEEISPIEDFAGNMSLSFRDHTFDDPKYTVDECKEKDLTYAAPL
YVIAEFMNNETGEIKTQTVFMGEFPLMTDKGTFIINGTERVVVSQLVRSPGVYFEESIDK
TSDKHIFSAKVIPSRGAWLEFEVDKRDQVGVRIDRKRKQSVTTLLQALGMSHSDILEEFG
EFESMRSTLEKDRIASQDEALIDIYRKQRPGEPPTRDAGEAMLNNLYFNSKRYDLAKVGR
YKIDKKLGLEGSLSESTLRLQDVVAAIKYIVALHDGVSEYTSTDGKAVRVETDDIDHFGN
RRIRAVGELIQNQVRTGLSRMERVVRERMTTQDVEAITPLTLINIRPVTAAIKEFFGTSQ
LSQFMDQNNPLSGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIG
LIGSLATFARINPFGFIESPYRKVVSGQVTDEVVYLTADDEDRHIIAQANAKIDEQGRFL
EEEVLVRLPGGEPDLVVVADVDFMDVSARQMVSVATAMIPFLEHDDANRALMGSNMQRQA
VPLLRSEMPLVGTGMERRAAVDAGDVITAAKAGVIEELSADLIVVMADDGTRQTYPIGKF
QRSNAGNSYNQRVLFDEGDRVEAGSILADGPSTDQGELAIGKNLLVAFMSWEGHNYEDGI
ILSSRMVQDDVLTSIHIEEHEVDARDTKLGREEITRDIPNVGDDVLADLDERGIIRIGAE
VEPGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLRVPHGETGTVIGVQVFNE
DEDGDILPTGVNEMVRVYVAQKRKITDGDKLAGRHGNKGVIAKILPVEDMPFLEDGTPID
IILNPMGVPGRMNIGQVMETHLGWVAKAGWDLDPADPTAADLPEGALHGEPDTPVAVPVF
DGLTADEVTGLIANHRPNRDGERMVKENGKARMYDGRSGEPFPEPVSVGYMYMLKLHHLV
DDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDDIA
GRVKVYEAIVKGENIPEPGIPESFRVLLKEMQSLCLNVEVLSSDGTAQEVQESDEEVFRA
AEELGIDLSRRPHEGVGSIEEV
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
ttggctgcctcgagcaccgatcgcaccactgacatcgcacttcgtaccgcctcgcctcgc
gtcaccttcgcgaagctcggcgaccccatcgaggtcccggatctgctgagtctgcagacg
acctctttcgactggctgctcggcaacgagcgctggcaggagcgtgccgctgaggcctcc
gccgccggtcgcgaggacgtcccgcaggcctccggtctcgcggacatcctcgaggagatc
tctccgatcgaggacttcgccggcaatatgtcgctgtcgttccgcgatcacaccttcgac
gacccgaagtacacggtcgacgaatgcaaggagaaggacctcacctacgcggctccgctg
tacgtcatcgcggagttcatgaacaacgagaccggtgagatcaagacccagacggtcttc
atgggcgagttcccgctcatgacggacaagggcacgttcatcatcaacggcaccgagcgc
gtcgtcgtctcgcagctggtccgctccccgggcgtgtacttcgaggagtcgatcgacaag
acctccgacaagcacatcttctcggcgaaggtcatcccttcccgcggtgcgtggctcgag
ttcgaggtcgacaagcgcgaccaggtcggtgtgcgcatcgaccgcaagcgcaagcagtcc
gtcaccaccctgctgcaggcgctcggcatgtcgcacagcgacatcctcgaggagttcggc
gagttcgagtcgatgcgctccacgctcgagaaggaccgcatcgcctcccaggacgaggcg
ctcatcgacatctaccgcaagcagcgtccgggcgagccgcccacgcgcgatgcgggcgag
gcgatgctgaacaacctctacttcaactccaagcgctacgacctggcgaaggtcggccgc
tacaagatcgacaagaagctcggcctcgaggggagcctctccgagtcgaccctgcgtctg
caggacgtcgtcgccgccatcaagtacatcgtggcgctgcacgacggcgtctcggagtac
accagcaccgacggcaaggccgtgcgcgtggagacggacgacatcgaccacttcggcaac
cgtcgcatccgcgcggtgggcgagctgatccagaaccaggtccgcaccggcctgtcccgc
atggagcgcgtcgtccgcgagcgcatgaccacgcaggacgtcgaggcgatcacgccgctg
acgctgatcaacatccgtccggtcaccgccgcgatcaaggagttcttcgggacctcccag
ctgtcgcagttcatggaccagaacaacccgctgtcggggctgacgcacaagcgtcgtctc
tcggcgctcgggccgggcggtctctctcgtgaccgcgccggcatggaggtccgtgacgtc
cacccctcgcactacggccgcatgtgcccgatcgagacccccgagggaccgaacatcggt
ctgatcggctcgctggcgaccttcgcccgcatcaaccccttcggcttcatcgagagtccg
taccgcaaggtcgtcagcggccaggtcacggacgaggtcgtgtacctcacggccgatgac
gaggatcgtcacatcatcgcccaggcgaacgcgaagatcgacgagcagggacgcttcctc
gaggaggaggtgctggtgcgccttcccggcggcgagcccgacctggtcgtcgtcgccgac
gtggactttatggacgtctccgcacgtcagatggtctccgtcgccaccgcgatgatcccc
ttcctcgagcatgatgacgccaaccgtgcgctcatgggctcgaacatgcagcgccaggcc
gtgccgctgctccgttccgagatgccgctggtcggcaccggcatggagcgtcgcgccgcg
gtcgacgcgggcgatgtgatcaccgctgcgaaggccggcgtcatcgaggagctctccgcc
gacctcatcgtggtgatggccgacgacggcacgcgtcagacctacccgatcgggaagttc
cagcgctccaacgccggcaactcctacaatcagcgcgtgctcttcgacgagggtgaccgc
gtcgaggccggatcgatcctggccgatggcccctcgaccgaccagggtgagctggccatc
ggcaagaacctgctggtcgcgttcatgtcgtgggagggccataactacgaggacggcatc
atcctgtcctcgcggatggtccaggacgacgtcctcacctcgatccacatcgaggagcac
gaggtcgatgcgcgcgacaccaagctcgggcgcgaggagatcacccgggacatcccgaac
gtcggcgacgacgtgctggccgatctcgacgagcgcggcatcatccgcatcggtgccgag
gtcgagccgggagacatcctggtcggcaaggtcaccccgaagggcgagaccgagctgacc
ccggaggagcgcctgctgcgcgccatcttcggcgagaaggcccgcgaggtgcgcgacacc
tcgctgcgcgtcccgcacggcgagaccggcaccgtcatcggcgtgcaggtcttcaacgag
gacgaggacggggacatcctgcccacgggcgtcaacgagatggtccgcgtctacgtcgcg
cagaagcgcaagatcaccgacggcgacaagctcgccggccgtcacggcaacaagggcgtc
atcgcgaagatcctgccggtcgaggacatgccgttcctggaggacggcaccccgatcgac
atcatcctgaacccgatgggcgtgcccggccgtatgaacatcgggcaggtcatggagacc
cacctcggctgggtcgccaaggccggctgggacctggatccggctgacccgacggccgcg
gacctgccggagggcgcgctgcatggcgagcccgacaccccggtcgcggtccccgtcttc
gacggcctcaccgccgacgaggtcaccggtctgatcgccaatcaccgccccaaccgggac
ggcgagcggatggtcaaggagaacggcaaggcgcgcatgtacgacggccgctccggcgag
ccgttcccggagccggtctccgtgggctacatgtacatgctgaagctccaccacctggtg
gacgacaagctgcacgcgcgctcgacgggcccgtactcgatgatcacgcagcagccgctg
ggcggtaaggcccagttcggcggccagcgcttcggcgagatggaggtgtgggccctggag
gcctacggtgccgcctacgccctgcaggagctgctgaccatcaagtccgacgacatcgcc
ggccgcgtgaaggtttacgaggccatcgtcaagggagagaacatccccgagcccggcatc
ccggagtccttccgtgtgctgctcaaggagatgcagtccctgtgcctgaatgtggaggtg
ctgtccagcgacggcaccgcgcaggaggtccaggagagcgacgaggaggtcttccgcgcc
gcggaggagctcggcatcgacctgtcccgccgaccccacgagggcgtcggctccatcgaa
gaggtctga
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integrated database retrieval system
