Bacterioplanes sanyensis: CHH28_05990
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Entry
CHH28_05990 CDS
T04982
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bsan
Bacterioplanes sanyensis
Pathway
bsan03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CHH28_05990 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsan03021
]
CHH28_05990 (rpoC)
03400 DNA repair and recombination proteins [BR:
bsan03400
]
CHH28_05990 (rpoC)
Enzymes [BR:
bsan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CHH28_05990 (rpoC)
Transcription machinery [BR:
bsan03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CHH28_05990 (rpoC)
DNA repair and recombination proteins [BR:
bsan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CHH28_05990 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ASP38257
UniProt:
A0A222FGR0
LinkDB
All DBs
Position
1285578..1289798
Genome browser
AA seq
1406 aa
AA seq
DB search
MKDLVNFLRNQNNADEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQAKVRRERMGHIDLASPVAHIWFLKSL
PSRIGLMLDMTLRDIERILYYESFVVTEPGMTTLETGQLLTDEQYYEAIEEFGDEFEAKM
GAEAIEALLGHIELEDEVNRLREEIPATNSETKIKKLSKRLKILEAFLQSGNDPKWMIMK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPK
LRLHQCGLPKKMALELFKPFIFSKLEHRGLATTIKAAKKMVERETAEVWDILAEVIREHP
VMLNRAPTLHRLGIQAFEPQLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMATNNVLAPANGEPIIVPSQDVVLGLYWMTRERVNARGEGMVLADLDEVDRAYRSG
AAHLQARVKVRLTEHVTDDEGNTTVNTGLFDTTIGRAMLFRIVPKGLPFELVNQPMKKKA
ISRLINTAYRKVGLKDTVIFADQVMYTGFEFATRSGTSIGVNDFVIPDAKAEIIANADAE
VKEIEDQFAAGLVTHGEKYNKVIDIWSRANELVAKAMMDNLSTEPVVDRDGNDVEQESFN
SVYMMADSGARGSPAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFTSTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTDRDCGTERGLVVTPLIEGGDVVVALGDRIL
GRVMATDVVKPGSDEVVAPAGTLVDERWVKIIEAAGVDEVLVRSAITCDSRVGICSSCYG
RDLGRGHQVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASAADSVQVKNAGTVRL
HNLKTVTRTSGELVAVSRSGSIAVADEHGRERELYKLPYGAVISVKDGDAVDAGQKVATF
DPHTHPIVTEVAGRIEFVGMEEGITINRQTDELTGLSNIEVIDPKDRPAAGKDIRPMVKL
VDAAGNDVMLPGTNAPAQYLLPANALVNHENGIEVEVGDIIARIPQETSGNKDITGGLPR
VADLFEARKPKEPAILAEISGTVSFGKETKGKKRLVITPKDGGDPYEELIHKWRHLNVFE
GENVEKGEVISDGPLNPHDILRLKGVGDLAMYVTNEVQEVYRLQGVGIDDKHIEVIVRQM
LRKVLITEAGDSTFIPGDQVEYSAFLAENEQLEADGKVTAKGERVLLGITKASLATESFI
SAASFQETTRVLTEGAVTGKMDTLRGLKENVVVGRLIPAGTGLAYHEERKRKRQDRENER
LKTTPAGLSVSADEMEAKLSEAFSDK
NT seq
4221 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacttagtcaattttctgcgtaaccagaacaacgctgacgagtttgacgccatc
cgcatcggcctcgcctcgccagaaatgattcgttcttggtcgttcggtgaagttaaaaag
ccggagacgatcaactaccgtaccttcaagcctgagcgtgatggcttgttctgtgcgcgt
atctttggcccgatcaaagattacgagtgcttgtgtggcaaatataagcgcctcaagcac
cgtggtgtgatttgtgaaaagtgtggtgttgaagttactcaggcgaaagtacgtcgtgag
cgcatgggtcacattgacctggcctcgccagtggcgcacatctggttcctgaaatcactg
ccgtcccgtatcggtttgatgctggacatgaccctgcgtgatatcgaacgcatcctgtac
tacgagtcattcgtagtcacagagcctggtatgaccacgctggaaaccggtcagttgctg
accgatgagcagtactacgaagccatcgaagagtttggtgacgagtttgaagccaagatg
ggtgctgaagccatcgaagcactgctgggtcatattgagctggaagacgaagtaaatcgc
ctgcgtgaagaaattccggcgactaactcagaaaccaaaattaagaagctatctaagcgt
ctgaagattcttgaggctttcctgcagtctggcaatgatcccaagtggatgatcatgaag
gtactgccggttctgccgccagatctgcgtccgctggtaccgctggacggtggtcgtttt
gcgacctctgacctgaacgatctgtaccgccgcgtgatcaaccgtaacaaccgtttgaag
cgcctgctggagctgaatgcaccagacatcatcgtgcgcaacgaaaagcgtatgttgcaa
gagtcggtggatgccttgctggataacggtcgtcgtggtcgtgccattactggttcgaac
aagcgtccgctgaaatctctggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgttgggtaagcgtgttgactattcgggtcgttcggtaattaccgtaggtccaaag
ctgcgcctgcaccaatgtggtctgccgaagaaaatggcactggagctgttcaagccattc
atcttctccaagctggagcaccgtggtttagccaccacgattaaagcggctaagaagatg
gttgagcgcgaaaccgccgaagtttgggacatcctggcggaagtgattcgcgaacaccca
gtgatgctgaaccgtgcacctacgctgcaccgtttgggtatccaagcgtttgaacctcag
ctgatcgaaggtaaagcgatccaactgcacccattggtgtgtgcggcgtacaacgctgac
ttcgacggtgaccaaatggcggtacacgtaccgctgaccatcgaagcacagctcgaagcg
cgtgctttgatgatggcaaccaacaacgtactggcacccgcgaacggtgagccaatcatc
gtaccgtcgcaagacgtggtactgggcctgtactggatgactcgtgagcgtgttaacgcg
cgtggcgaaggcatggtgttggctgacttggacgaagtggatcgcgcttaccgctcaggt
gctgcgcacttgcaggcgcgcgttaaagttcgcctgactgagcacgtgaccgacgacgaa
ggcaacaccacggttaacaccgggttgttcgacaccaccattggtcgtgccatgttgttc
cgcatcgtgccaaaaggtctgccatttgagctggttaaccagccgatgaagaagaaggcg
atttcgcgtctgatcaacaccgcttaccgtaaagtgggtttgaaagacaccgtcatcttt
gctgaccaagtgatgtacaccggctttgaattcgcgacccgttctggcacctcgattggt
gtgaatgacttcgtgattccggatgctaaggcagaaatcattgccaatgccgacgccgaa
gttaaagagattgaagatcagtttgccgcgggtctggtaacccacggcgaaaaatacaac
aaggtgatcgacatctggtctcgtgccaacgagctggtggcgaaagccatgatggacaac
ctcagcactgagcctgtggtcgaccgcgatggcaacgatgttgagcaagaatcgttcaac
tcggtgtacatgatggctgactcaggtgcacggggtagcccagcacagattcgtcagttg
gcgggtatgcgtggtctgatggccaagccggacggctcgatcattgagacgccgattacc
gcgaacttccgtgaaggtctgaacgtactgcagtactttacctcgacccacggtgctcgt
aagggtctggcggatacggcactgaagacagcgaactcgggttacttgactcgtcgtctg
gtcgacgtggcgcaggatctggtggtgaccgaccgtgactgtggcactgagcgtggcctg
gtggtaacgccactgatcgaaggcggtgacgtagtcgtggccttgggcgaccgtattctg
ggtcgtgtgatggctaccgacgtggttaagccaggcagtgacgaagtggtcgcgccagcg
ggtactctggtcgacgagcgctgggtgaaaatcatcgaagcggccggtgtcgacgaagta
ctggtacgctcggcgattacttgtgatagccgcgtgggcatttgttcgtcctgttacggt
cgtgacttgggtcgcggtcaccaggtgaacgtcggtgaggccgtgggtgttatcgctgca
cagtcgatcggtgagccaggtacacagctgacgatgcgtaccttccacattggtggtgcg
gcatcgcgtgcatcggcggcggacagtgtacaggtgaaaaacgccggtactgtgcgtctg
cacaacttgaagacggttactcgtaccagtggcgaactggtggcggtgtcacgttcgggc
tcgattgctgttgctgatgagcacggtcgtgagcgtgagctgtacaaactgccatacggt
gcggtgatctcagtgaaagatggtgatgcggtagacgccggtcagaaggtcgcaaccttc
gatccgcacacgcacccaatcgtgactgaagtagccggtcgtattgaatttgttggtatg
gaagaaggcatcaccatcaatcgtcaaaccgacgaattgacgggtctgtcgaacatcgaa
gtgatcgatccaaaagatcgtccagccgctggtaaagacattcgcccaatggtgaagctg
gtcgatgctgccggtaacgatgtgatgctgccaggtaccaatgcgccagcgcagtatttg
ctgccggccaacgccttggtgaaccatgaaaatggcatcgaagtggaagtgggtgacatc
atcgctcgtattccacaagaaacctcgggcaacaaagacattaccggtggtctgccacgc
gtggctgacttgttcgaagcgcgtaagccgaaagagcctgccatcttggcagaaatctca
ggtaccgtgagcttcggtaaagagaccaaaggtaagaagcgtctggtgattacaccaaaa
gacggtggcgatccgtatgaagagctgatccacaagtggcgtcacctcaacgtattcgaa
ggtgaaaacgttgagaaaggtgaggtcatctctgatggaccgctgaacccgcacgacatt
ctgcgtctgaaaggcgtgggtgacttggccatgtacgtgaccaacgaagtgcaggaagtt
taccgtctgcaaggtgtgggcattgacgataagcacatcgaagtgatcgtgcgtcagatg
ctgcgtaaggttctgattaccgaagccggtgattcgacctttattccaggtgatcaggtt
gagtactcagccttcctggccgagaacgagcagttggaagcagatggcaaggtaacggcg
aaaggcgagcgtgtgctgctgggtatcaccaaagcctcgttggcaaccgagtcgtttatt
tctgcggcatcgttccaggaaactacgcgcgttctgaccgaaggtgcggtgactggcaag
atggataccctgcgtggcctgaaagaaaacgtagtggtaggtcgtctgattccagccggt
accggtctggcataccacgaagagcgcaagcgtaagcgtcaggatcgtgagaacgagcgc
ctgaagactactcctgcgggtctgagtgtgtcggcggacgaaatggaagccaagctgagc
gaagcgttcagcgataaataa
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integrated database retrieval system
