Bipolaris sorokiniana: COCSADRAFT_163454
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Entry
COCSADRAFT_163454 CDS
T03124
Name
(RefSeq) hypothetical protein
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
bsc
Bipolaris sorokiniana
Pathway
bsc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bsc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
COCSADRAFT_163454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bsc03019
]
COCSADRAFT_163454
Messenger RNA biogenesis [BR:
bsc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
COCSADRAFT_163454
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
COCSADRAFT_163454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
DUF3819
CNOT1_TTP_bind
CNOT1_HEAT
ARM_Cnot1
Prion
Motif
Other DBs
NCBI-GeneID:
19132246
NCBI-ProteinID:
XP_007703396
JGI:
Cocsa1_163454
UniProt:
M2R1B4
LinkDB
All DBs
Position
Unknown
AA seq
2287 aa
AA seq
DB search
MSQQHPWGAPRQSQSTRLAPISTAFAHDHHLHQHQHQQRNPSTPSPNPSRHAQSPATAHF
PSLPPASSSTSSPFSPAGQQLPASQLLSSRGSRTIAPQAASHLASSAAAATQGASAQSNS
GGGASKLVRASPSLSVSSTTGSPSTSAHSSAASSQNLSRIVIAQIFLLLSQFGPVKDDKD
RAKWDTQTEQIRKLVDTNGMEVFTKYFRRVLQNNAATIFGSGARNADPNGSYQILLTEVH
KIRKEPEQADKIAESISTSEGDLFRDFDLATFISHFKLDSVAKTMLALACRKTDLRPKAD
AVLSTIGDDLLMAIAQPTQPDDMTHEYLAALVERLLQDPPPGWDEEKKMSLAYAVQMRYQ
QTHQQIPGIVESKLILVELTDGARNPLVKLVKQAGPQGTATVEACKEVLALAETRDISYQ
QVAAVLLYLALSTGYNAKNFVAALREHRTGQRIDWQDVVLAFDRDHLRIERHQFLAIYNA
LLPVAQENEKFDIQALWGGQWQHDLTQLYFVVAFLSSTKQELDVTQIPRLRTSYSMKTFE
GASEDARAFAEEAVRHPFVSLDATAALFNMIFQTSETYHTAQLMGIPDLVINPHTAEFLV
AAAAVPKPWGALQEQALKQLFDPYFHKKLPIYNFVLYGLWQQDIQWLVDRFVDAYNADSM
TLTLILEHAETNNWLEPLIRSNTDISLDLAAQAHARGKFELEPWLQQTFDQAGPLFRRIL
TNFLSARAGEEMQRLRDDHQPLNLPLAVKTVYPLLWFLAECGLPEQELLPLQRNCIQAYP
RLINYGEGVDDVIDANGQNGNALPEEADKKMQEHFKNMYSGDSDVRDIISALKKYKESRD
PADQDLFACMIHGLFDEYNCFGEYPLEALATTAVLFGGIINFNLLSRIALQVGLAMVLEA
VQEFRPEDSMYKFGLQALIHFSNRLSEWPNYCDQLLIVPGLQGTEIYAKAEEVVGQQVGE
VNGEGHNGMGMANGNGVDENIHQEPAVPKFSCLYVDPPLRPELYEDPDEDVQDKVLFVLN
NVSERNLRDKINDLTEAVEERHHQWFANYLVEERAKMQPNFQQLYLDMLDLFNDKMLWAE
VLRETYASVVRMLNTDSTLGSTERGHLKNLGSWLGSLTIARDQPIKFRNISFKDLLHEGY
DSDRLLLVIPFTCKVLVQAAKSTIFKPPNPWLMEMLGVLMELYHFADLKLNQKFEIEVLC
KGLELDHKDIEPTNSIRGRPPVDEEFLGSIVTDGMEAFGDLSIMSLNRGARGPNERFSSA
AMTAALPDFTNQLQYPPSGNSAVPPATLKKIFLTAVNQAIQEIIAPVVERSVTIAAISTS
QLINKDFAMEPDEEKLRNAAHTVVKALSGSLALVTCKEPLRMSIQNNIRLTARDLPDQGL
PEGHIIMFVNDNLDLVCNTVEQAAEMSSLAEIDMQIEEAVRIRRMFRSSRPNEPFKDANI
SPWAFYIPEPYRQMPGGLNREQLAIYEDFGRQSRGAPHVNNTSQDGGRQLPDVLQDQFAA
VPNLPTPGAAPAEPRQPAQQQPRLQSLQAPHAALTQQQPNGYMDAPGLERGQRGVEDLLI
ELTRVIKEAPEERITDLQPGSSSVHQVFDQLISSIEFAGPNKETWAFRIAGQVTNHLFSD
SLSRLEVEVMAHLLSHLCQLSVQTSRQVLMWLATLHDDDRIFKATVMVALMEVNLMDMHR
LNTTIAKAIQERRVAAVEMLSSLIEELLLNEHPSAFRADFAMSIDALTTWLAEDSGFELG
KRVIANLQASPNEQSLTPPASSHKDQLDYVFDEWVHLQMENMPKKTVGAFIYQLHQQKVL
ETQESSVAFLRTCIDASVIAYEQEHSSPYGSGNEDIATVKVDALGRLIVDLLIYQGEQEG
ATKKSKARYLDQMLVVVVLVLCNHHSTREDAFNQKVFFRLFSTILFHLNDAVKEESLAEQ
KADIFLAVAKALLIVQPSNIQRFAFSWLALVAHRIFVPAMLEEGQDDKRWDIYAQLIETL
LIFTGKLIKPTGETIMTQQFYRGVLRVLLVIHHDFPEFLVENHFRFCNSIPMHCTQLRNL
IVSAYPSTILEMPDPFTAGLKADRLEHDLQAPVIRADIEQILSDVGIKNAIDNLLKGSEL
KDQDVDTVTCAVYYAEPKPAGFELVPTTANPALVHAIILYIGISTLGTGSATVPIFDAES
PATKLIERLAKDFHPEARFHFISAIANQLRFPNTHTHFYSYALLHLFGPPSEDSLASEIQ
ETITRVLLERLLVHRPHPWGLIITLLEMLKNRTYAFWELPFVKAAPEVERLLNALFTHAQ
QSPRPIA
NT seq
6864 nt
NT seq
+upstream
nt +downstream
nt
atgagccagcaacacccctggggcgccccgagacaatcccaaagcacacgcctcgctccc
atctccacggcctttgcccacgaccaccacctccaccagcaccagcaccagcagcgcaat
cccagcaccccttcgcccaacccctcgcgccacgcccaatcgcccgccactgcacacttc
ccctcgctgccgcccgcctcgtcgtcgacatcgtcgcccttctcgcccgcaggacagcag
ctccccgccagccagctgctgtcctcccgtgggtccaggaccatagcgccccaagctgca
tcgcacctggcttcctccgccgcagccgctactcagggcgccagtgcacagtcaaacagc
ggcggaggagcctccaagcttgtccgcgcctcgccctcactctcagtctcgagcaccacc
ggctcccccagcacctcggcccactcgtctgccgcatcgtcccagaacctctcccgcatc
gtcatcgcacagatatttcttctgcttagccaattcgggccagtcaaggacgacaaggac
cgcgccaagtgggacacgcaaaccgaacagatcaggaagctcgtcgacacaaacggcatg
gaggtctttaccaagtacttccgccgtgtgctgcagaacaatgcagccaccatctttggc
tccggcgcacgcaatgccgaccccaatggcagctaccagatcctgctcaccgaagtgcac
aagatacggaaggagcccgagcaggctgacaagatcgcagagtccatcagcaccagcgag
ggtgatctgttccgtgactttgatctcgccacattcatatctcatttcaaactagactca
gtcgcaaagactatgctggcgctcgcctgcaggaagacagatctgcggcccaaagccgac
gcggttctatctaccataggcgatgacttactcatggccattgcgcagccgacccagcca
gacgacatgactcatgaatacctcgccgcactcgtcgaacgcctcctccaggacccgcca
ccaggctgggatgaagagaagaagatgagcctcgcttacgctgtccagatgcgatatcag
cagacacaccaacagataccaggcatcgtcgaatcaaagttgatactcgtcgagctcact
gacggggcgcgtaaccctcttgtcaaactagtcaagcaggcagggcctcaaggcacggct
acggtcgaggcatgcaaagaagtgcttgcattggccgagacacgcgacattagctaccag
caagttgctgccgttctgctctaccttgccctttcgaccggatacaatgcgaagaatttt
gtagccgcgttacgtgagcaccggacaggacaacgaatagactggcaagacgtagtgctt
gcctttgaccgagatcaccttcgcatcgagcgacatcaattcctggccatctacaacgca
ttgcttcccgtagcccaagagaatgaaaagttcgacatacaggcactgtggggaggtcaa
tggcagcatgacttgacgcagctgtatttcgtagtggctttcctgtcatccacaaaacag
gagctggacgtaacccagatccccaggctccgcacgtcgtactcaatgaagacatttgaa
ggagcttcagaggatgcaagagcctttgccgaggaggctgtcagacatccatttgtttcg
ctggacgcaacggcagctcttttcaacatgatcttccagacctcagagacgtaccatacg
gctcagctgatgggcatacctgacttggtgatcaacccccacacagcagagttccttgta
gcggcagcggcagtcccaaagccatggggcgcattgcaagagcaagcgttgaagcagctg
tttgatccttattttcacaagaagctacccatctacaactttgtcctctacggcttgtgg
caacaggatatccaatggctcgtggaccgctttgtcgacgcatacaacgccgattcgatg
actctcactctaatcctggagcatgccgagacgaataactggttggagccactgatccgc
agtaacactgatattagcctggacttggctgcccaggcacatgcacgtgggaaattcgag
cttgagccctggctacagcagacattcgaccaagctgggccactcttccgtcgcattctg
accaactttctcagtgcgcgggcaggtgaagagatgcaacgcctccgagacgatcatcaa
cctcttaacctaccactagcagtgaagacggtatacccactcctttggttccttgcagaa
tgtggtctacccgagcaggaactacttcccctgcagcgaaactgtatccaggcctatcct
cgcctgatcaactatggcgagggcgtggacgacgtcattgacgccaatggtcaaaatggc
aacgcccttcctgaagaagccgacaaaaagatgcaagagcacttcaagaacatgtacagt
ggcgacagcgatgttagagacatcatctccgctctgaagaagtacaaagaatcccgcgat
cctgcggaccaggacctgtttgcctgcatgattcatggcttgttcgacgagtacaactgt
ttcggagagtacccactcgaagcattggcgacgactgctgtgctttttggcggtatcatc
aacttcaatcttctgtcccggatcgcacttcaagttgggttagcaatggttctagaagct
gtccaagagttccgtcctgaagacagtatgtataaattcggtcttcaggctctcattcac
ttctcgaatcgactctctgaatggcccaactactgcgaccaacttcttatcgtacctggg
cttcaaggcactgaaatttatgctaaagctgaagaagtagtaggtcagcaagtcggtgaa
gtcaatggcgagggccataatggtatgggcatggccaacggtaacggcgtcgatgagaat
atccaccaagagccagccgtgcccaagttcagctgtctgtatgtcgacccgccactgcgc
ccagaactatacgaggacccagatgaagatgttcaggacaaggtcttgtttgtactgaac
aacgtgtccgagcgcaatctgcgtgacaagattaacgacctgactgaagctgttgaggag
agacatcatcaatggttcgccaactacctcgttgaggagcgcgcaaagatgcaacccaac
ttccagcaattgtatctcgacatgcttgacctgttcaatgacaagatgctctgggccgag
gttcttcgagagacatacgccagtgttgttcgcatgctgaacaccgactctaccttggga
tctaccgaacgtggccacctgaagaacctgggttcgtggctcggatccctgaccatagcc
cgcgaccagccaatcaaattccgcaacatttcattcaaggacctgttgcacgagggttac
gattcagaccgcctcctattggtgattccgtttacctgcaaagtattggtacaagccgcg
aagtcgacaatttttaagcctcccaatccatggttgatggagatgctgggtgtgctcatg
gagctatatcactttgctgacctgaagctcaaccagaagttcgagattgaagttctctgc
aagggcttggagcttgaccacaaggacatagagccaactaacagcatccgaggacggccg
ccagttgatgaagagttccttgggtccatagtgacagacggcatggaagccttcggcgac
ctttctatcatgagcctcaatcgcggcgcacgtggacctaatgaacgcttctcttcagca
gcaatgacggccgctctgcccgatttcaccaaccagcttcaatacccgccttctggaaat
agtgcggttccgccagcgacgctcaagaagattttccttactgcagtcaatcaggctata
caggaaatcattgctcccgtagttgaacgctccgttactattgccgcaatctcgacatcg
cagctgatcaacaaagactttgccatggagcctgatgaggagaagcttcgcaatgcagca
catactgttgtcaaagctctttccggttctttggctcttgtcacctgcaaagagcccctc
cgtatgagtatccagaacaacatccgccttacagctagggatcttcccgatcagggactg
ccagagggacatatcatcatgtttgtcaacgacaaccttgacctggtctgcaacaccgtt
gagcaagcagctgaaatgtcatctctcgctgaaattgacatgcaaatcgaagaagccgtc
cgtatacgtcgcatgttccgtagctctcgtccaaatgagcccttcaaggatgcaaacatc
agtccatgggcattctacattccggagccatacagacagatgcctggcggtttgaacagg
gagcagttggccatctatgaagattttggcaggcagtcgcgaggcgcgccgcacgttaac
aacacctctcaagatggcggtcgacaactcccagatgtcctccaagaccaatttgcggcg
gtgccaaacctcccaaccccaggtgctgcaccagctgagccacgacagccggcccagcaa
caacctaggctacagagtcttcaagcaccccatgcagcgctgactcagcaacagcctaac
ggctacatggacgctcctggccttgagcgaggccagcgtggtgtagaggacctcctcatc
gagttgacccgcgtcatcaaagaggcaccagaggagcgtataacagacctccaacctggt
agcagcagtgtccaccaagtcttcgaccagctcatctcaagcatcgagttcgccggtcct
aacaaagagacatgggccttccgtatcgctggacaagtcacaaaccacctcttctctgac
tccttgagtcgcttggaggtcgaagtcatggctcatctattgagtcatctgtgccaactg
tccgtccagacatcacgacaagtgctgatgtggttggccactcttcacgacgacgaccgt
attttcaaggctaccgtcatggtggcccttatggaagtcaatctcatggatatgcaccgc
ttgaacacaacaattgccaaggccattcaagaacggcgtgtcgctgcagtagagatgctg
tcaagcctgatagaagaactcttgctcaatgagcaccctagtgctttccgtgccgacttt
gccatgtccatcgacgctctcactacttggctagcagaagactctggctttgagcttgga
aagcgtgtcattgccaacttgcaagcgtcgcccaatgagcagtcactgacaccaccagca
tctagccacaaagatcagctcgactacgtctttgacgagtgggtgcatcttcagatggaa
aacatgccaaagaaaactgttggtgctttcatctaccagctccaccaacagaaggtgctg
gagactcaggaatcttcagtcgcatttcttcgcacttgcatcgatgcgtctgtgattgca
tatgagcaggaacactcatccccatatggaagtggtaacgaagacattgcgacggtcaag
gtcgatgctcttggtcgactcatcgtcgaccttcttatctatcaaggtgaacaagagggt
gccaccaagaagagcaaagcgaggtacttggatcagatgctcgtcgtcgtagtgctcgtc
ctttgtaaccaccacagcacccgagaagatgctttcaaccagaaggtgttcttccgccta
ttttcgacgatcctgttccacctgaacgatgcagtgaaggaagagtcgttggcagaacaa
aaggcagacattttccttgcggttgccaaagctcttttgatcgttcagccctccaacatt
caacgctttgccttctcatggctcgcattggttgcacatcgtatctttgtgccggccatg
ctggaggagggtcaagacgacaagcgttgggatatttacgctcagcttatcgagacgctc
ttgatctttactggaaagctgattaagcccactggagaaactatcatgacccagcagttc
taccggggcgttctgcgcgtgttgttggttatccaccatgacttccccgagttcctggtc
gagaaccatttcaggttctgcaacagcattccaatgcattgcacacagctccgtaacctg
attgtcagcgcatatccatctactatccttgagatgccagatccatttactgcagggtta
aaggcagaccgcctcgagcacgatcttcaagccccagtcatccgtgccgatatcgagcag
atactttcagacgtaggcatcaagaatgccattgacaatctgctgaagggctctgaactg
aaggaccaggacgtcgacacagtcacctgcgcggtgtattacgcagagcccaagcctgca
ggatttgagcttgtcccaacaacagccaatccagcgctggtacacgcgatcatattgtat
attggcatatcgactcttggtacaggatcagccacagtgccaatctttgacgcagagagc
ccagctaccaagctcattgaaaggctggccaaggacttccaccctgaggccaggttccac
tttatcagcgccatcgcgaaccaattgcgctttccaaacacgcatactcacttctacagc
tatgcgctactgcacctcttcggacccccaagcgaggactcgctggcatcagagattcaa
gagactatcactcgtgtattgttggagcgcctgttggttcaccgcccgcacccatggggt
ctcatcattacgctgctggaaatgttaaagaaccgcacatatgcattctgggagctgccg
ttcgtgaaggcggcgcctgaagttgaacgccttctgaacgctctcttcacgcatgctcaa
cagagcccacgcccaatagcttag
DBGET
integrated database retrieval system
