Bartonella schoenbuchensis: AAJP84_02805
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Entry
AAJP84_02805 CDS
T10346
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
bsch Bartonella schoenbuchensis
Pathway
bsch03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsch00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AAJP84_02805 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsch03021
]
AAJP84_02805 (rpoC)
03400 DNA repair and recombination proteins [BR:
bsch03400
]
AAJP84_02805 (rpoC)
Enzymes [BR:
bsch01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AAJP84_02805 (rpoC)
Transcription machinery [BR:
bsch03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AAJP84_02805 (rpoC)
DNA repair and recombination proteins [BR:
bsch03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AAJP84_02805 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
XAM20261
LinkDB
All DBs
Position
complement(621492..625703)
Genome browser
AA seq
1403 aa
AA seq
DB search
MSHEVMNLFNPQVPTQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPGRISTLLDLTLKDIERILYFENYIVTEPGLTSLKMHQLLSEEEYMLAIDEFGEDQFTA
MIGAEAIYELLAAMELDKIANDLRVELAETTSELKQKKLIKRLKIVESFLESGNKPEWMI
MKTIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
VQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEHPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIVSDKEPGEGMAFADMGELYHALE
NKVVTLHTKIKGRFKNIDENGKEVAKLYDTTPGRLIIGELLPKNPNISFDIVNQEMTKKN
ISKIIDQVYRHCGQKETVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKSRLVAETEAL
AKEYEQQYNDGLITQGEKYNKVVDAWGKCTDRIADEMMKRIQAVAFDPKTGSQRQMNSIY
MMSHSGARGSANQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDAIISAVDCGTVKGLTMQPIVDAGQIVASLGQRILGRT
ALFDILHPVSGEVILQGGAMIEEADVAKIEEAGIQSVQIRSALTCETRLGVCAKCYGRDL
ARGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHLGGTAQVVDSSYFEASYEGTVELRNRN
VVRNSEGHLVVMGRNMAVIVKDETGKERVVHRISYGSRIFVDDGDVVKRGQRIAEWDPYT
RPILTEVDGYIGFEDMIDGLSVTETADESTGITKRLVIDWRANPRSAELKPAIIIHADKK
GEHIAKLHKGGEARYMMSVDTILSVELGSYVKAGDVIARLPLESAKTKDITGGLPRVAEL
FEARRPKDHAIIAEVSGTVRFGRGYKNKRRIIIEPNDANFEPVEYLIPKGKLFHLQEGDQ
IEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQK
VEITESGDSGYIPGDNVDRIELDEINDNLIAEGKKPASGNPILLGITKASLQTPSFISAA
SFQETTRVLTEAAVSGKIDTLQGLKENVIVGRLIPAGTGGTIAQIRRIATIRDDLIVDEQ
RKSSHSEESKAMLTDMTANAAVE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgagccacgaggtcatgaatcttttcaatcctcaggtaccaacgcagacatttgactct
attcgtatttcaattgcgagtcctgagaagattctgtcctggtcatacggcgaaataaaa
aagccagagactattaattatcggacgtttaagccagagcgtgatggtcttttttgtgcg
cgtatatttggtcctattaaagactatgaatgtctatgtggcaaatataagcgtatgaaa
tataaaggcattatctgtgaaaagtgtggtgtagaagttactctttcacgtgtgcgccgt
gaacgcatggggcatattgaacttgcagcgccggtcgctcatatttggttccttaagtca
ttgccgggtcgtatttctactcttttagatttaactttaaaggatatcgaaagaattctt
tattttgaaaattatattgttaccgaaccgggtctgacgtcgctcaaaatgcaccagctt
ctttccgaagaagaatatatgttggctattgatgaatttggagaggaccaatttactgct
atgattggtgcagaagctatttatgagcttcttgctgcaatggagttggataaaatagcg
aatgatttacgcgttgaattggctgaaacaacttcggaattaaaacaaaaaaaactgatt
aaacggctcaagattgttgaaagcttccttgaatccggtaataaaccggaatggatgatt
atgaaaacaattccggtgattccgccagatttacgtccattggttccgcttgatggtggt
cgttttgcaacatcggatttaaatgatctctatcgacgtgttataaatcgtaacaatcgt
ttaaaacgactgattgagctgcgtgctcctggaattattgtacgcaatgaaaagcgtatg
gtacaagaagcggtcgatgcattgttcgacaatggtcgccgtggacgcgtgattactggg
gcaaataaacgtccattaaagtcactttcagatatgctaaaaggtaagcaagggcgtttc
cgtcaaaacttacttgggaagcgtgttgattattcaggtcgttcagttattgtgacgggg
cctgaattgaaattgcatcaatgtggtcttcctaaaaagatggctctcgaattgtttaag
ccattcatttatgcacgccttgatgcaaagggctattcatcaactgtaaaacaagcaaaa
aagcttgttgaaaaagaacatccggaagtttgggatattttggatgaagttattcgtgaa
catcctgttttgttaaatcgtgcaccaacgcttcatcgtctaggaattcaagcttttgag
cctgttttgattgaaggaaaggcgatacaacttcacccattggtgtgtacagcttttaac
gcggattttgacggcgatcaaatggcagtgcacgttcctctttcacttgaagctcagctt
gaagctcgtgttttaatgatgtcgactaataatattctacatccagccaatggtgcaccg
attattgttccatcacaagatatggttcttggtctttattatctttcaattgtttctgat
aaagaaccaggtgaaggaatggcatttgctgatatgggtgagctgtatcatgctttagag
aataaagttgtgactcttcatacgaagatcaaaggccgttttaaaaatatagatgaaaat
ggtaaagaggttgccaagctttacgatacaacgcctggtcgtttgattattggcgagctt
ttgcctaaaaatccgaatatctcatttgatattgttaatcaggagatgactaaaaagaac
atttctaaaataattgatcaagtttatcggcattgtgggcaaaaagaaacggttattttc
tgtgatcgtattatgcaacttggtttttctcatgcttgtcgtgctggtatttcctttggt
aaagatgatatggttatccccgatagcaagtcacgtttggttgcagaaacggaagctttg
gctaaggaatatgagcagcaatataatgatggtttaattacacagggtgaaaaatataac
aaagttgtagatgcctggggtaaatgtactgatcgcattgcggatgaaatgatgaagcgt
attcaagctgttgcatttgatccaaagacaggttctcagcggcaaatgaattcaatctac
atgatgtcgcattcgggtgcgcgtggttctgctaatcagatgaggcagttagctggtatg
cgcggattaatggcaaaaccatctggtgaaattatcgaaacaccgatcatttctaatttt
aaagagggtttaactgttaacgaatactttaactcgacccatggtgctcgtaaggggctt
gctgatactgcattaaaaactgctaactctggttatctaacgcggcgtcttgttgatgtt
gcgcaggatgctattatttcagcggttgattgtggtactgtaaaaggtcttactatgcaa
ccaatcgttgatgcaggacagattgttgcgtcgcttggtcagagaatccttggtcgtaca
gcactttttgatattttgcacccagtttctggtgaagttattcttcagggtggtgcgatg
attgaagaggctgatgtcgctaagattgaagaagctggaattcagtctgttcagattcgt
tctgctctgacttgtgaaacgcgtcttggtgtttgtgctaaatgttatggtcgtgatttg
gcacgtggaacgccggtcaatcaaggtgaagcagttggtgtgattgcggctcagtcaatt
ggtgaaccaggaacgcagcttaccatgcgtacattccacttaggaggaacggcgcaggtt
gttgattcatcttattttgaagcgtcttatgaaggtacagtagaactacgtaatcgtaat
gtagttcgcaactctgaaggccatttggtggttatggggcgcaatatggctgttattgtc
aaggatgagactggtaaagagcgtgttgtgcatcgtattagctatggttcacgcattttt
gttgatgatggtgatgttgttaaacgtggacaacgtatagcagagtgggatccttataca
cgcccaattcttactgaagttgatggctatataggttttgaagatatgattgatggttta
tcagtaactgaaacagctgatgaatctacggggattacgaagcgtttggtgattgattgg
cgtgctaatccacgcagtgctgagctaaagccagcaattatcattcacgcagataagaaa
ggtgagcatattgctaaattgcacaaagggggggaagctcgttacatgatgtcagtggat
actatcctttctgttgagcttggttcttacgttaaggcgggtgatgttattgcgcgtttg
ccactggaaagtgctaagaccaaagatattacgggtggtttaccacgtgtggctgaactt
ttcgaagcgcggcgtccgaaagatcacgctatcatcgctgaagttagtggtacagttcga
tttggtcggggttataaaaataaacgccgtattattattgagccaaatgatgcaaatttt
gagccagtagaatatttaattccaaagggtaagctatttcatttacaagaaggcgatcaa
attgaaaaaggtgattatattcttgatggcaacccagcacctcatgatattttagcgatt
aagggtgttgaagctttggcgtcttaccttgttaatgagattcaagaggtttatcgttta
cagggtgttttgattaatgataagcacattgaagtgatcgttcgtcaaatgttgcaaaaa
gttgaaattacagaatctggagattctggttatattccaggtgacaatgttgaccgtatt
gaattagatgaaatcaatgataatttaattgcggaaggtaaaaagcctgcatctggtaat
cctatacttcttgggattacgaaagcatctcttcagacaccgtcctttatttcagcagcg
tcatttcaggaaacaactcgggtgcttactgaagcagcagtttcaggaaagattgatact
ttgcaagggttgaaggagaatgttattgttggccggcttattcctgcaggtacaggtggc
acaatcgctcaaattcgtcgtattgccacgattcgtgatgatttgattgtagatgaacag
cgtaagtctagtcatagtgaagaaagtaaagctatgttgacggatatgacggcgaatgct
gctgttgaataa
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integrated database retrieval system
