KEGG   Blastococcus saxobsidens: BLASA_1171
Entry
BLASA_1171        CDS       T01752                                 
Name
(GenBank) DNA primase, small subunit
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
bsd  Blastococcus saxobsidens
Pathway
bsd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:bsd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    BLASA_1171
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bsd03400]
    BLASA_1171
Enzymes [BR:bsd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     BLASA_1171
DNA repair and recombination proteins [BR:bsd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     BLASA_1171
SSDB
Motif
Pfam: LigD_Prim-Pol
Other DBs
NCBI-ProteinID: CCG02112
UniProt: H6RW95
LinkDB
Position
1113490..1114434
AA seq 314 aa
MADDERDGVTLSSLDSPLGDGLGVTKRQLVDHLDAVADRLVPLLAGRPLSVLRVRPGQPP
FMQRNVSKGAPDWVRTVAVWAESAHREVHQVLCDDRRTLLWLANQRAVEFHVPFLPAGSR
EPTGLVLDLDPPDGADFSAVVATARLARQALEDPGLAGAVKTSGSSGLHVVVPVHGSPVE
DVAAATRALAHRTARLDPAIATTAFLKEERHGRVFVDSTRSGTGTVVAAYSPRVRPELPV
SAPVDWADLDTVRPGDVTVASGAERLGDWSALLPEPQRLPAELVAEGHTIPVARVAAMHE
GKRRARERRAADDG
NT seq 945 nt   +upstreamnt  +downstreamnt
gtggcggatgacgaacgcgacggcgtcacgctgagcagcctcgactcgccgctgggcgac
ggcctcggcgtgacgaagagacagctcgtcgaccacctggacgcggtcgccgaccggctg
gtgccgctgctggccggccggccgctgtcggtgctgcgggtgcgccccggtcagcccccg
ttcatgcagcgcaacgtcagcaagggcgcgccggactgggtgcgcacggtggcggtctgg
gccgagtcggcgcatcgcgaggtgcaccaggtgctctgcgacgaccgccggacgctgctg
tggctggccaaccagcgtgcggtcgagttccacgtgccgttcctgccggccggctcccgg
gagcccaccggcctggtgctcgacctggacccgccggacggcgccgacttctccgccgtg
gtggccacggcccggctcgcccggcaggcgctggaggaccccgggctggcgggcgcggtg
aagacgagtggctcctcgggcctgcacgtcgtggtgcccgtccacgggtcaccggtggag
gacgtcgcggccgccacccgggcactggcgcaccggacggcgcggctcgaccccgcgatc
gcgacgacggcgtttctcaaggaggagcggcacggccgggtcttcgtggactccacgcgg
tcggggacgggcacggtcgtcgccgcctacagcccccgggtgcgcccggagctgccggtg
tcggcgccggtggactgggccgacctggacacggtccggccgggcgacgtcaccgtcgcc
tccggagccgaacggctgggcgactggtcggcgctgctgccggagccgcagcgcctgccc
gccgagctggtggcggaggggcacacgatcccggtcgcccgggtggccgccatgcacgag
ggcaagcggcgggcacgggagcgccgcgccgccgacgacggctga

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