Blastococcus saxobsidens: BLASA_1171
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Entry
BLASA_1171 CDS
T01752
Name
(GenBank) DNA primase, small subunit
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
bsd
Blastococcus saxobsidens
Pathway
bsd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BLASA_1171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bsd03400
]
BLASA_1171
Enzymes [BR:
bsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BLASA_1171
DNA repair and recombination proteins [BR:
bsd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BLASA_1171
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
Motif
Other DBs
NCBI-ProteinID:
CCG02112
UniProt:
H6RW95
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All DBs
Position
1113490..1114434
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AA seq
314 aa
AA seq
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MADDERDGVTLSSLDSPLGDGLGVTKRQLVDHLDAVADRLVPLLAGRPLSVLRVRPGQPP
FMQRNVSKGAPDWVRTVAVWAESAHREVHQVLCDDRRTLLWLANQRAVEFHVPFLPAGSR
EPTGLVLDLDPPDGADFSAVVATARLARQALEDPGLAGAVKTSGSSGLHVVVPVHGSPVE
DVAAATRALAHRTARLDPAIATTAFLKEERHGRVFVDSTRSGTGTVVAAYSPRVRPELPV
SAPVDWADLDTVRPGDVTVASGAERLGDWSALLPEPQRLPAELVAEGHTIPVARVAAMHE
GKRRARERRAADDG
NT seq
945 nt
NT seq
+upstream
nt +downstream
nt
gtggcggatgacgaacgcgacggcgtcacgctgagcagcctcgactcgccgctgggcgac
ggcctcggcgtgacgaagagacagctcgtcgaccacctggacgcggtcgccgaccggctg
gtgccgctgctggccggccggccgctgtcggtgctgcgggtgcgccccggtcagcccccg
ttcatgcagcgcaacgtcagcaagggcgcgccggactgggtgcgcacggtggcggtctgg
gccgagtcggcgcatcgcgaggtgcaccaggtgctctgcgacgaccgccggacgctgctg
tggctggccaaccagcgtgcggtcgagttccacgtgccgttcctgccggccggctcccgg
gagcccaccggcctggtgctcgacctggacccgccggacggcgccgacttctccgccgtg
gtggccacggcccggctcgcccggcaggcgctggaggaccccgggctggcgggcgcggtg
aagacgagtggctcctcgggcctgcacgtcgtggtgcccgtccacgggtcaccggtggag
gacgtcgcggccgccacccgggcactggcgcaccggacggcgcggctcgaccccgcgatc
gcgacgacggcgtttctcaaggaggagcggcacggccgggtcttcgtggactccacgcgg
tcggggacgggcacggtcgtcgccgcctacagcccccgggtgcgcccggagctgccggtg
tcggcgccggtggactgggccgacctggacacggtccggccgggcgacgtcaccgtcgcc
tccggagccgaacggctgggcgactggtcggcgctgctgccggagccgcagcgcctgccc
gccgagctggtggcggaggggcacacgatcccggtcgcccgggtggccgccatgcacgag
ggcaagcggcgggcacgggagcgccgcgccgccgacgacggctga
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