Blastococcus saxobsidens: BLASA_4307
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Entry
BLASA_4307 CDS
T01752
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bsd
Blastococcus saxobsidens
Pathway
bsd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BLASA_4307 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsd03021
]
BLASA_4307 (rpoB)
03400 DNA repair and recombination proteins [BR:
bsd03400
]
BLASA_4307 (rpoB)
Enzymes [BR:
bsd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BLASA_4307 (rpoB)
Transcription machinery [BR:
bsd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BLASA_4307 (rpoB)
DNA repair and recombination proteins [BR:
bsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BLASA_4307 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
CCG05130
UniProt:
H6RMU2
LinkDB
All DBs
Position
complement(4163426..4166935)
Genome browser
AA seq
1169 aa
AA seq
DB search
MAGSRPTSINPSTTESGPFGQQNQSPVSGPRTGEADQAKIPGAPIRVSFAKISEPLAVPD
LLALQTASFDWLVGSPDWRATLSPEEQADAVGGLAEILEEISPIEDFSGSMSLSFSNPRF
EDVKASLEECKDKDMTYAAPLFVTAEFMNNTTGEIKSQTVFMGDFPIMTNKGTFVINGTE
RVVVSQLVRSPGVYFDKTLDKTSDKDVFSAKVIPSRGAWLEFDVDKRDTVGVRIDRKRRQ
PVTVLLKALGWGEDRIREHFQWSPTVLATLEKDHIAGQDEALLDIYRKLRPGEPPTRESA
QALLENLFFNPKRYDLAKVGRYKVKKKLGVDVPQSTSTLTEDDIVATIEYVVRLHAGEPD
HGTDDIDHFGNRRLRTVGELIQNQIRVGLSRMERVVRERMTTQDVEAITPQTLINIRPVV
ASIKEFFGTSQLSQFMDQTNPLAGLTHKRRLSALGPGGLSRERAGMEVRDVHPSHYGRMC
PIETPEGPNIGLIGSLSSFGRVNPFGFIETPYRKVENGTVTTQIDYLTADEEDRFVVAQA
NSPLDAQGRLAEERVLVRTKGGEVDYLAPENVDYMDVSPRQMTSVATAMIPFLEHDDANR
ALMGANMQRQAVPLLRSEAPLVGTGMELRAAVDAGDVVVAEKAGVVEDSTADYVTVMADD
GTRQTYRLLKFRRSNQGTSINQSPVVDEGQRVEVGQVIADGPCTDQGEMALGKNLLVAFM
PWEGHNYEDAIILSQRLVQDDVLSSIHIEEFEVDARDTKLGAEEITRDIPNVSEDVLADL
DERGIIRIGAEVVPGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVKHGES
GKVIGVRVFSREDGDELPAGVNELIRVYVAQMRKISDGDKLAGRHGNKGVISKILPQEDM
PFLEDGTPVDIVLNPLGVPGRMNVGQVLETHLGWVAKQGWQVEGNPDWAKNLPEAAKSAG
PGTRTATPVFDGAREEEIVGLLGSTTPNRDGDRMVKETGKARLFDGRSGEPFPEPISVGY
VYILKLLHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMECWAMQAYGAAYALQE
LLTIKSDDILGRVKVYEAIVKGENIPEPGIPESFKVLLKELQSLCLNVEVLSGDGQAIEL
RDTDDEVFRAAEELGIDLSRREPSSVEDV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
ttggcaggctctcgccccaccagcatcaaccccagcaccaccgaatccggccccttcggc
cagcagaaccagtctcccgtctcgggtccccgtaccggcgaggccgaccaggcgaagatc
cctggcgccccgatccgcgtctccttcgccaagatctccgagccgctcgcggtccccgac
ctgctggcgctgcagaccgcgtcgttcgactggctggtcggcagccccgactggcgggcc
accctctcgcccgaggagcaggccgacgccgtcggcggcctggccgagatcctcgaggag
atctccccgatcgaggacttcagcggctcgatgtcgctgtccttctccaacccgcgcttc
gaggacgtcaaggcgtccctcgaggagtgcaaggacaaggacatgacctacgcggcgccg
ctgttcgtcaccgccgagttcatgaacaacaccaccggtgagatcaagagccagacggtg
ttcatgggcgacttcccgatcatgacgaacaagggcacgttcgtcatcaacgggaccgag
cgcgtcgtcgtctcccagctcgtccggagccccggcgtctacttcgacaagaccctggac
aagacgtcggacaaggacgtcttcagcgccaaggtcatccccagccgtggtgcgtggctg
gagttcgacgtcgacaagcgcgacaccgtcggcgtccgcatcgaccgcaagcgccgccag
ccggtcaccgtgctcctcaaggccctgggctggggcgaggaccgcatccgcgagcacttc
cagtggtcgcccaccgtcctggccaccctggagaaggaccacatcgccgggcaggacgag
gccctgctcgacatctaccgcaagctgcggccgggcgagccgccgacgcgcgagtcggcg
caggcgctgctggagaacctgttcttcaacccgaagcgctacgacctcgccaaggtcggc
cgctacaaggtcaagaagaagctgggtgtcgacgtgccgcagagcacctcgacgctgacc
gaggacgacatcgtcgccaccatcgagtacgtcgtgcggctccacgccggcgagcccgat
cacggcaccgacgacatcgaccacttcggcaaccgccgcctgcgcaccgtcggtgagctg
atccagaaccagatccgggtcggcctgtcccgcatggagcgcgtggttcgcgagcggatg
acgacgcaggacgtcgaggcgatcacgccgcagaccctgatcaacatccggccggtcgtc
gcctccatcaaggagttcttcggcaccagccagctgtcccagttcatggaccagaccaac
ccgctcgcgggcctgacccacaagcgccgcctctcggcgctgggtcccggcggtctgtcc
cgcgagcgggccggcatggaggtgcgcgacgtgcaccccagccactacggccgcatgtgc
ccgatcgagacgccggaaggcccgaacatcggcctgatcggttcgctgtcctcgttcggc
cgggtgaacccgttcggcttcatcgagacgccgtaccgcaaggtcgagaacggcaccgtc
acgacccagatcgactacctgaccgccgacgaggaggaccgcttcgtcgtcgcgcaggcc
aacagcccgctcgacgcgcagggtcgcctcgccgaggagcgcgtcctggtccgcaccaag
ggcggtgaggtcgactacctcgcccccgagaacgtggactacatggacgtctcgccgcgg
cagatgacctcggtcgcgacggcgatgatcccgttcctcgagcacgacgacgccaaccgt
gcgctcatgggcgcgaacatgcagcgtcaggcggtgccgctgctgcgcagcgaggccccg
ctggtcggtaccggcatggagttgcgcgccgccgtcgacgccggcgacgtcgtcgtggcg
gagaaggccggtgtggtcgaggactccactgccgactacgtcaccgtcatggccgacgac
ggcacccggcagacctaccggctgctgaagttccgccggtcgaaccagggcacctcgatc
aaccagagccccgtcgtggacgagggtcagcgggtcgaggtgggccaggtcatcgccgac
gggccgtgcaccgaccagggcgagatggcgctgggcaagaacctgctcgtcgccttcatg
ccgtgggagggccacaactacgaggacgcgatcatcctgtcgcagcgcctcgtgcaggac
gacgtcctgtcctcgatccacatcgaggagttcgaggtcgacgcccgcgacaccaagctc
ggcgccgaggagatcacccgggacatcccgaacgtctccgaggacgtgctcgccgacctg
gacgagcgcggcatcatccgcatcggcgccgaggtcgtccccggcgacatcctcgtcggc
aaggtgacgcccaagggcgagaccgagctgacgcccgaggagcggctgctgcgggcgatc
ttcggtgagaaggctcgcgaggtccgcgacaccagcctcaaggtgaagcacggggagtcc
ggcaaggtcatcggtgtccgcgtgttctcgcgcgaggacggcgacgagctgcctgccggc
gtcaacgagctgatccgggtctacgtcgcccagatgcgcaagatctccgatggcgacaag
ctcgccgggcgccacggcaacaagggcgtcatctcgaagatcctgccgcaggaggacatg
ccgttcctcgaggacggcaccccggtcgacatcgtgctcaacccgctcggcgtccccggc
cggatgaacgtcggccaggtgctggagacccacctcgggtgggtcgccaagcagggctgg
caggtcgagggcaacccggactgggcgaagaacctgcccgaggccgcgaagtcggcgggt
ccgggcacgcgcacggcgacgccggtgttcgacggtgcgcgcgaggaggagatcgtcggg
ctgctcggctccacgaccccgaaccgcgacggcgaccggatggtcaaggagaccggcaag
gcgcggctgttcgacggccgctccggggagcccttccccgagccgatctcggtgggctac
gtctacatcctgaagctgctgcacctggtcgacgacaagatccacgcccgttcgaccggc
ccgtactcgatgatcacgcagcagccgctgggtggtaaggcgcagttcggtggtcagcgc
ttcggcgagatggagtgctgggcgatgcaggcctacggcgcggcctacgcgctgcaggag
ctgctcaccatcaagtccgacgacatcctcggccgcgtcaaggtctacgaggcgatcgtc
aagggcgagaacatccccgagccgggcatcccggagtcgttcaaggtgttgctcaaggag
ctgcagtcgctctgcctcaacgtcgaggtgctgtccggtgacgggcaggcgatcgagctg
cgcgacaccgacgacgaggtattccgggccgcggaggagctgggcatcgacctgtcccgc
cgcgagccctccagcgtcgaagacgtgtga
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