Betta splendens (Siamese fighting fish): 114841915
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Entry
114841915 CDS
T08231
Symbol
polr2a
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl03020
RNA polymerase
bspl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
114841915 (polr2a)
09124 Replication and repair
03420 Nucleotide excision repair
114841915 (polr2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bspl03021
]
114841915 (polr2a)
03400 DNA repair and recombination proteins [BR:
bspl03400
]
114841915 (polr2a)
Enzymes [BR:
bspl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
114841915 (polr2a)
Transcription machinery [BR:
bspl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
114841915 (polr2a)
DNA repair and recombination proteins [BR:
bspl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
114841915 (polr2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
114841915
NCBI-ProteinID:
XP_028983002
UniProt:
A0A6P7KKA1
LinkDB
All DBs
Position
2:23236228..23247974
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCFFCSKLLVDSN
NPKIKDILAKSKGQPRKRLTHVYELCKGKNICEGGEEMDSKFGMEQQETEEDLTKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERIHEIFKRIADEEDIILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKMPQPAILKPRPLWTGKQVFSLIIPGHINV
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNLATVKPSNKAFEKKFKFDCTNDRALRRILQEDVVKDVMTNAHVQSCLEREFDKMKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINTRTPTDLNPLRVIEGVHDLSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLCSKRMIEEFRLSTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGMF
FGSVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagtacag
ttcggcatcatcagtccagatgaacttaaacggatgtcggttacagaaggggggattaaa
taccccgaaacaacagaaggaggacgtcctaaactcggtggccttatggaccctagacaa
ggggtcatagaacgaagtggaagatgtcagacatgtgcaggcaacatgacagaatgtcca
ggtcactttggacacatagaactggcaaagccagttttccatgtcggcttcataacgaag
attatgaaggttcttcgatgtgtctgctttttttgctccaagctcttagtggattcaaac
aatccaaagatcaaagacatcttggccaaatctaaagggcagccaagaaagcgtttgaca
cacgtatatgagctgtgcaaaggaaaaaatatatgtgaaggaggcgaggagatggacagc
aaatttggaatggagcagcaggagacagaggaggacctgaccaaggagaagggtcacggc
ggctgtgggcgctaccagccacgtatcagacgctctggcttggaactgtacgctgagtgg
aagcacgtgaatgaggattcacaggagaagaaaatcctcctgagtcctgagcgtatacat
gagatcttcaagcgaatcgcagacgaagaggacataatcttgggcatggatccaaagttt
gcccgacctgaatggatgattgtaactgtactgcctgtgcctccactggctgtaaggcct
gctgtggtcatgcagggatctgctcgcaaccaggatgacttgacccacaagctggctgat
atcgtaaagatcaacaaccagctcagaagaaacgagcaaagtggcgcagcagctcatgtc
atagctgaggatgtgaagctgcttcagtttcacgtagcaacaatggtggataatgaactg
ccaggcctgccaagggcaatgcaaaagtctggccgccctctcaaatctattaagcaacgg
ctaaagggaaaagagggtcgagttcgaggtaacctcatgggaaagcgtgtggacttctca
gctcgaactgtcatcaccccagaccccaacttgcagatcgatcaagtgggcgtaccacga
tccattgctgccaatatgactttccctgaaattgtcacaccctttaacattgacagattg
caagagctggtgcgaagaggtaacagccagtacccaggagccaaatacatcatccgtgac
aatggagacagaatcgacctgcgattccaccctaaaccaagtgaccttcatctccagatt
ggctacaaggtggaaagacacatgtgtgatggtgacatcgtgatcttcaatcgacagcct
acactacataaaatgtccatgatggggcacagggttcggattctgccctggtccacattt
cgactcaacctcagtgtcaccaccccatacaacgctgattttgacggtgatgagatgaac
cttcacctccctcagtcccttgaaacgagggctgagattcaggagttggctatggtgcca
cgtatgattgttacccctcagtcaaacagacctgtcatgggcattgtgcaggacactctc
acagcagtgcgcaaattcaccaaaagagacgtcttcttggagaggggtgaagtgatgaac
ctcctcatgttcctctccacctgggatgggaagatgcctcagccagccatcctcaagccc
cgtcctctgtggacaggcaaacaggtcttcagcctcatcattcctgggcacatcaacgtc
atccgcacacacagcacccaccctgatgatgaagacagtggcccctacaaacacatttca
cctggggacacaaaggtcatagtggagaacggtgaattgatcatgggaatcctgtgtaag
aagtctctgggaacatcggctggctcgctcgtccacatctcttacctggagatgggccac
gacatcaccagactcttctactccaacattcagactgtggtcaacaactggctgcttatt
gagggtcattccattggtattggcgactctattgctgatgccaagacgtaccttgacatc
cagaatacaatcaaaaaggctaaacaggatgtgatagaagtcatcgaaaaagcccacaac
aacgagctggagccgacgcctggtaacactctgaggcagacgtttgagaaccaggtcaat
cgtatcctcaacgatgctcgtgacaaaacaggatcctctgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggctggttctaagggatcaaagattaatatctca
caggttattgctgtcgtggggcaacagaacgtggagggtaaacgaatccccttcggtttc
aagcaccgtacgctgcctcacttcattaaggatgactacggcccagagagtagaggcttt
gtggagaactcctacctggccggcctgacgcccacagagttcttctttcacgccatggga
ggcagagaaggtctgatcgacacagctgtcaagactgcagagacgggttacatccagcgt
cgtctcatcaagtctatggagtctgtgatggtaaagtacgacggcacagtgcgtaactcc
attaaccaggtggtgcagttgcgctacggtgaggacggcctggcaggcgagaacgtcgag
tttcagaatctggcaacagtcaagccatcaaacaaggcctttgaaaagaaattcaagttc
gactgcaccaacgatcgagcgctgagacgcatattgcaggaagacgtggtgaaggacgtc
atgaccaatgctcatgtgcagagctgcttggagagggagttcgacaagatgaaggaggac
agggaggtcctccgagccattttccctaccggggacagcaaggtggtgctgccatgcaac
ttggccagaatgatttggaatgctcagaagatcttccgcatcaacactagaaccccaact
gacctgaatcctttaagggtgattgagggtgttcacgatctgagtaagaagcttgtgatt
gtcaatggtgacgacccgctcagcagacaggcccaggagaacgccactctgctcttcaac
atccacctccgctccacgctgtgctccaaacgcatgatcgaggagttccgcctgtccacc
gaggcttttgactggctgctgggagagatcgagaccaagttcaatcagtccatcgcccac
ccaggtgaaatggttggagctttggctgctcagtcgctgggagagcctgccacccagatg
accctgaacactttccactacgccggtgtgtctgccaagaacgtgacgctcggtgtgcct
cgtctgaaggagttgatcaacatttccaagagaccgaaaacgccttcactgaccgtcttc
ctgttgggccaagctgcacgtgatgcagagcgggccaaggacatcctctgtcgcctagag
cacactaccctgcgaaaagtgactgccaacacggccatctactacgaccccaaccctcag
aacacggtggtggctgaggaccaggagtgggtcaacgtctactatgagatgcccgacttt
gacgtgactcgcatttcaccctggctgctgcgcatcgagctcgaccgcaagcacatgacc
gatcgcaagctgactatggagcagatcgcagagaagatcaacgccggtttcggagatgat
ctgaactgtatcttcaacgacgataatgcagagaagctcgttctgcggattagaatcatg
aacagcgacgagaacaagttccaagaggatgaggaggtggtggataaaatggatgacgat
gtgttcttgaggtgcattgagtccaacatgctgacagacatgactctgcaaggcatcgag
cagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcatcatc
acagaggatggtgagttcaaggccctgcaggagtggatccttgagacggacggcgtgagc
ctcatgagagtgctgagcgagaaggatgtggatcctgtcaggaccacctccaacgacatt
gtggagatcttcacggttttgggaatcgaggctgtgcgaaaggctctggagagggagctg
taccatgtcatctcattcgacggctcctatgtcaactaccgtcacttggctctgctttgt
gacaccatgacctgccgcggtcacctcatggccatcacgcgtcacggcatcaaccgtcaa
gacacggggccactcatgaagtgttcctttgaagagacggtggatgtgctgatggaggcc
tcgtcgcatggggagagtgaccccatgaaaggcgtctcggagaacatcatgcttggccaa
ctcgcccctgcaggaacgggctgcttcgacctgctgctggatgctgagaagtgcaaatac
gggatggagatccctaccaacatacctggcatcagcgtggctggacccacgggaatgttc
ttcggttcagtgcccagtcccatgagtggcatgtcaccggccatgaccccgtggaacacc
ggcgctactccggcctacggcgcctggtcccccagtgttggaagcggcatgaccccagga
gcagcaggtttctctcccagcgccgcgtcggacgccagtggcttctctccaggctactcc
cccgcctggtcccccactcctgggtctccaggttctccggggcccgccagtccatacatc
ccttctccaggtggagccatgtcaccaaactactcacccacctcacccgcctacgagccg
cgttcccctggaggctacaccccccagagtccaggctactcccccacatcaccctcctac
tctcccacatctccctcttactcccccaccagccccaactacagcccaacatctccctcc
tactctcccacttcgcccagttactccccaacgtctccttcctattcacccacgtctcca
tcttattccccgacttctccatcctactcccccacttccccttcgtactccccgacctcc
ccctcttactctcccacttctccgagctacagcccaacgtcacccagctacagcccaacg
tcgcccagctactctcccacttcgccatcttactcacctacctcgccttcctattctcca
acatcaccttcctactcccccacctctccttcttactcccccacctcgccttcctactct
cccaccagcccaagctacagccccacctcacccaactatacccccacctcgcccagttac
tcccccacctcgccttcctactctccaacatcgccttcctactcgccaacctcccccaac
tacaccccgaccagcccaaactactcccccacttctccctcatactcccctacctctccg
tcctactcaccctccagtccacgttacaccccacagtctcccacctacacccccagctca
ccttcatacagccccagctccccctcctactctcccacttctcccaaatacaccccaacc
tcaccatcatacagccccagctccccagagtataccccgacctcacccaagtactccccc
acttctccaaagtattcccctacgtcgcccaaatactcgcccacttctcccacctactcc
ccgacaaccccaaaatattccccaacctctccaacctactcccccacctcaccaacttac
acccccaccagccccaaatactcccccacctcaccaacttattcccctacttcacccaag
tactcgcccacgtcgcctacgtattcgccaaccagtcccaaaggctctacgtacagtccc
acctcccccggatacagccccacctcccccacctacagcccggcaatcagcccagatgac
agcgatgaggagaacaactga
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