Betta splendens (Siamese fighting fish): 114865751
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Entry
114865751 CDS
T08231
Symbol
col9a2
Name
(RefSeq) collagen alpha-2(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114865751 (col9a2)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114865751 (col9a2)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114865751 (col9a2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bspl00535
]
114865751 (col9a2)
Proteoglycans [BR:
bspl00535
]
Extracellular matrix (ECM) proteoglycans
Others
114865751 (col9a2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114865751
NCBI-ProteinID:
XP_029022987
UniProt:
A0A6P7NSV7
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Position
11:6643238..6730228
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AA seq
708 aa
AA seq
DB search
MAKDVLMNARLHNPDLWWRKRLREGTAARSHISTAHKVERKRGPPGAQGPAGPPGPSGTP
GSDGIDGDKGPPGPPGPPGQKGEPGQPGPDGAPGENGIDGLIGAKGDRGPAGSPGPKGQP
GPSGEPGPPGAGLPGLSGIPGPIGLPGEIGPTGSKGVMGPPGPPGLPGPPGKPGPPGKFL
GGEEGSADFQCPLNCPAGPKGPLGLQGVKGHKGRAGVLGDPGSIGKPGPKGETGISGEQG
IPGPSGPIGLRGYPGMMGPKGEAGPRGYKGIGGPVGIPGPPGEEGPRGPPGDAGDKGDKG
NQGIQGPQGAVGKKGENGLPGIDGKDGTPGIPGIKGGPGQAGRPGLPGPQGAAGLPGSPG
AKGAAGVKGEPGPRGHAGSSGAPGPLGEPGLPGEAGMEGVPGPKGDRGQRGPVGPQGIIG
KPGSKGERGPIGLPGPQGLSGTKGDKGFQGKVGSKGDIGDPGVEGLAGEKGEKGLSGEPG
PKGQQGVRGDTGHNGPTGDPGKPGDQGPIGLPGPRGLNGERGVPGMPGIQGSRGRDASDQ
HIIEVVLKMLQERLAAVAVSAKRAVLGGAGVMGPPGPPGPPGAPGSQGPHGLPGARGIPG
IIGAHGQIGNTGLKGKRGPKGERGDPGKPHPGPPGPPGIQGPPGIDGVARDGKPGERGPQ
GSPGEAGLPGKAGSPGLPGFCEAAMCLAASAYTSPRLQEAGTIKGPNF
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagatgtgttaatgaatgcacggttacataatccagacctgtggtggaggaag
aggctgcgagagggaacagcagccagatctcacatctcgacagcccacaaagtggagaga
aagagaggtccacctggcgctcagggtccagccggcccaccgggcccttcaggcacccct
gggtcagacggcattgatggggacaaagggcctcctgggcccccaggtccaccaggacaa
aagggggaacctggacagccaggtcctgatggagcaccaggagagaatggtattgatggt
ttaataggcgcaaagggtgatcgaggtcctgctgggagccctggccccaagggtcaacct
ggaccaagtggtgagcctggccccccaggggccggccttccaggactctctggaatccca
ggaccaattggtctccctggtgaaattggtccgactggatcaaagggtgtcatgggacca
cctggacctccaggacttcctggtcctccaggcaagccaggtcctccaggcaagttcctt
ggtggagaggaggggagtgcagatttccagtgtcctcttaattgtccagcaggacctaaa
ggccccctgggattgcagggagtcaagggacacaaaggccgcgctggtgtgctgggagat
cctggtagcataggaaaaccgggtcccaagggcgaaacaggcatttctggagaacagggc
attccaggaccttcgggtccaattggtctgaggggctatccaggaatgatgggacccaaa
ggagaagcaggaccacgtggttacaagggcattggtggacctgtaggaatccctgggcct
cctggcgaggagggacctcggggacctcctggagatgcaggagacaagggtgacaaaggc
aaccaaggtatccagggcccacaaggtgcagttggcaaaaagggagagaatggactgccg
ggtattgatgggaaagatggcacacctggcattcctggaatcaagggaggccctggccag
gctgggaggccaggtcttcctggtcctcagggagcagcgggattacctggcagtccagga
gctaaaggtgcagctggagtcaagggtgaacctggtcctaggggtcatgctggctcatct
ggtgcccccggacctctgggtgagcccggtcttcctggtgaggctggtatggaaggagtc
cctggacccaagggagacagaggccagcgaggaccagttgggccgcaggggatcattggc
aagccaggatctaaaggagagagggggcccattggtcttccaggtccccagggtctaagt
ggaaccaaaggagacaagggcttccaaggaaaagttgggtcaaagggagacattggtgac
cctggtgttgagggattggctggcgagaaaggcgaaaagggcttgtctggcgaacctggg
cccaaaggacagcaaggagtgaggggtgatactggccacaatggacccactggagaccct
ggtaaaccaggagaccaggggccaatagggctgcctggtccgagggggcttaatggggag
agaggagtacctggtatgcctggaattcaggggtcacggggacgtgatgcttcagaccag
catattattgaagtggtgttgaagatgttgcaggagaggctagcagcagtggcagtgagt
gccaagagggctgtgctcggtggtgcaggagtaatgggtcctcctgggcctcccggccct
ccaggagcacctggttcgcaggggccccatggcttgcctggagctcgaggcatcccaggc
attattggagcacatggacagattggaaacacgggacttaaaggaaagagagggccaaaa
ggagaaaggggagatcctggtaagccacacccaggacctcctggacccccaggaatacaa
ggtcctccaggtattgatggggtggctcgggatggtaagcccggagagagaggacctcag
ggatcacctggagaggccggtctcccaggtaaagcgggttcaccaggtctcccaggattc
tgtgaggcagcaatgtgtctggctgcatctgcatacacatcccctagactacaggaagca
ggaacaatcaaaggacccaatttttaa
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