Betta splendens (Siamese fighting fish): 114870764
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Entry
114870764 CDS
T08231
Symbol
col9a1b
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
bspl
Betta splendens (Siamese fighting fish)
Pathway
bspl04510
Focal adhesion
bspl04512
ECM-receptor interaction
bspl04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bspl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
114870764 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
114870764 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
114870764 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
bspl00535
]
114870764 (col9a1b)
Proteoglycans [BR:
bspl00535
]
Extracellular matrix (ECM) proteoglycans
Others
114870764 (col9a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
114870764
NCBI-ProteinID:
XP_040929913
UniProt:
A0A6P7PIX1
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Position
15:complement(10076956..10090897)
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AA seq
678 aa
AA seq
DB search
MTAPSVRGPLVVLLLQLVLVCSAQRSEGTPGPVGPAGVPGIDGIDGERGVGGEDGPPGPD
GDAGKPGSSGLPGIPGNDGLTGPIGDPGPDGPPGQKGEPGQSGPRGAAGVGPDGTTGPPG
PGGLPGEVGKAGPPGPMGVRGPQGPRGPTGPRGATGMLGSADLCPNSCPPGTPGHPGLPG
MKGHKGVKGEAGEPGKQGHKGEEGEQGGVGEVGAQGPTGPQGIRGAMGMIGPKGETGARG
IDGDPGPQGVSGATGDQGQRGVMGEPGPKGEEGIQGPRGITGLPGPKGETGLPGVDGREG
IPGMPGAKGTTGKPGVPGEVGLQGLPGLPGVPGPKGLSGTKGDAGKTGLPGTIGSAGKPG
ERGEQGEVGPAGPIGEPGDIGEQGPLGPAGKMGARGPKGDPGLPGLPGPPGPPGVKGERG
ERGETGPKGEQGVQGDEGNPGDKGDSGEPGELGVKGEVGVPGDPGRKGPEGSRGQPGIEG
PPGTPGPRGMQGNRGPPGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPESG
IAGLPGKPGPPGPPGPPGDNGFPGQGGARGLPGLKGPPGQIGLKGPKGELGDRGSRGSTV
RGPKGQPGPPGLPGEPGKPGYGQDGRDGQRGPPGIHGQPGVPGPPGAAGPNGYCDPSACN
LQAGAAHQSMDVKGPAGN
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacggctcccagcgttagagggccacttgtggtgctgctcctgcagctcgtcctcgtt
tgctccgctcagaggagtgaggggactcctggccctgttggacctgcaggtgtcccagga
attgatggcatagatggggaaagaggagttggtggcgaagatggcccacctgggcctgat
ggagatgcagggaaacctggctcttcagggttaccaggaatcccagggaatgatggtttg
accggccctataggagatccggggcctgatggtccccccggacagaaaggtgaacctgga
cagtctggacctcgaggagcagctggtgtggggccagatggaaccacaggaccacctggg
ccaggaggacttccaggtgaagtgggaaaagctggaccaccagggcccatgggtgtgaga
gggccacagggacctcgtgggccaacagggcccagaggtgccacaggaatgctaggcagt
gccgacctgtgtccaaactcttgccctcctgggacacctggacatcctggccttcctggc
atgaagggccataagggtgtgaaaggcgaagccggagagcctggtaaacaggggcacaag
ggggaagaaggagagcaggggggcgtaggagaagtcggcgctcaaggaccaacgggtcct
cagggaattcgtggagccatgggaatgattgggcccaagggagagacgggagcccgaggc
attgatggagatccaggtccccagggtgtttctggggcaactggagatcaaggccagagg
ggcgtaatgggtgaacctggacccaaaggtgaagagggtattcaagggccaagaggaatc
acaggccttccaggtcctaagggagagactggtttaccgggggtggacggccgcgagggg
atccctgggatgccaggagcaaagggaaccactgggaagccaggagttcccggagaggtt
ggacttcaggggcttcctggtttgccgggcgtccctggaccaaaaggcctgagtggcact
aagggagatgcaggcaaaacaggacttcctggcacaataggatcagctggcaaacctggg
gaacgcggagagcagggcgaggtgggacctgctggacccattggcgagcctggagatata
ggagagcaagggcccctgggaccagctggcaagatgggcgccagaggacccaaaggtgac
cctggcctccctggtctacccggtcctcctggacctcctggagtgaaaggagaacgggga
gagcgtggagaaacaggacccaaaggagagcagggagtacaaggtgatgagggaaaccct
ggagacaagggagattctggtgaaccaggagaactcggagttaagggggaggttggtgtt
cccggagatccaggcagaaaaggcccggaaggaagcagaggtcaacctggcatcgagggt
ccacctggcacgcctggacctcggggcatgcaggggaacaggggcccaccgggagtccga
gggtctcagggccctgcgggtaaagagccaagtgatcagcacatcaaacaagtctgcatg
cgagttatgcaagagcagttagcccagttagctgctagtttaaggaggcctgagtctggc
atagctggtttacctggaaaaccaggccctccgggacctcctggtcctccaggagacaat
ggatttcctggacaaggtggagcaagaggccttccaggactcaaaggaccaccagggcag
atcggtcttaaaggacccaaaggtgaattgggggacagaggctccagagggtccactgtg
cgaggacctaaaggtcagccaggtcctcctgggcttcctggtgagccaggcaaacctggc
tatggtcaagatggtcgtgacggacagagggggcctccaggtattcacggacagcctgga
gtacctgggcctcctggtgcagctggtcctaacggttactgtgacccatcggcctgcaac
ctgcaggcgggggccgcccaccagtctatggatgtgaagggacctgcagggaactaa
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