Bacteriovorax stolpii: C0V70_18160
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Entry
C0V70_18160 CDS
T05263
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
bsto
Bacteriovorax stolpii
Pathway
bsto03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
bsto00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C0V70_18160 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bsto03021
]
C0V70_18160 (rpoB)
03400 DNA repair and recombination proteins [BR:
bsto03400
]
C0V70_18160 (rpoB)
Enzymes [BR:
bsto01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C0V70_18160 (rpoB)
Transcription machinery [BR:
bsto03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C0V70_18160 (rpoB)
DNA repair and recombination proteins [BR:
bsto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C0V70_18160 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RelB
RnfC_N
Peptidase_M23
Gp13-like
Motif
Other DBs
NCBI-ProteinID:
AUN99997
UniProt:
A0A2K9NWV4
LinkDB
All DBs
Position
complement(3665720..3669847)
Genome browser
AA seq
1375 aa
AA seq
DB search
MTQVFSPNEWFRKTFSNTPAVLDTPPLMKLQVNSYEDFLQKDVPPAKRIDLGLQQVFKSV
FPIYDFNKTVSLEFVSYSLEEPKYTVKECRQRGLSYEAPLKVVVRLVFFDVSVDRDGAEQ
RTVSSVKEQEVYLGNIPLMAETGSFVYNGTERVIVSQLHRSPGIIFEHDNGKKHSSGKLL
YSARIIPHRGSWLDFEFDHKNILFARIDRKRKLHASVVLKAMGYSTSELLKEFYQMETIS
FNKDGSYSRKLDFNLLVGTRANADILDKSGNAIVKKGKKYTKASVKKMEDSKITELPAEL
EEVVGKVLAEDIFNEKTGEVICLANEALSEAKIHDLVKAGVKEVNVLYIDMINFGDQIRN
TLLIDKTETKEDALIKIFERLRPGEPPTVEAASQLFENLFFNKEKYDLSKVGRMKINYKF
GMNIPVEETVLTRRDILTTVQYLVELNNGKGKVDDIDHLGNRRVRAVGELLENQFRVGLV
RMERAVKERMAIQEIETMMPYDLVNQKPVAAAVKEFFGSSQLSQFMDQTNPLSEVTHKRR
LSALGPGGLTRERAGFEVRDVHPTHYGRMCPVETPEGPNIGLITSLATYARVSEYGFIET
PYQVVNEDRTISAPKYFSAFEEEGKVIAQLEAKYVDGKKIVGDAIAARSAGDFTVVGANE
VQLMDVSPTQMISIATSLIPFLEHDDANRALMGSNMMRQAVPVVRTDAPIVGTGVEQIIA
RDSGAIVYAKEGGRVIFVDSNRIVIQRDNFSEGESGVDVYKLTKYQRTNQNTCNNQKALV
KEGDKVLKGMVIADGPATQLGDLALGQNVLVAFMPWGGYNYEDSILINENILARDVFTSV
HIESFEIEARDTKLGKEEITRDIPNVSEEALKDLDEAGIIRVGAIIKPGDILVGKITPKG
ESQLSPEEKLLKAIFGDKAGDVKDTSLRVPSSVRGTVIDAKVYTREGVELDARSKEIIDH
ETTLIRRDERIEIKAIQTSAIQKIAEMFKGAKTTDKLISEDGTTELLGKGVAVTGEILAS
IPFELIGYLPLEAALEEKLSEYFADVRNRITRVRQKANDEIAKLHKGDELPPGVIKKVMV
YVAIKRKLQPGDKMAGRHGNKGVISNVVTAEDMPYLADGTPVEIVLNPLGVPSRMNIGQL
LELHLGWAGRGLGEKIKTMMEEKAKVNELKDFIFKIYKTKEVEAWLKSASDERVIEVAEQ
LSTGVRFSTSVFDGASEEDIKDMLELGDLDRSGKTTLFDGKTGDVFSEDVTVGAMYMLKL
HHLVDEKIHARSTGPYSLVTQQPLGGKAQFGGQRLGEMEVWALEAYGAAYTLQEFLTVKS
DDVIGRTRMYESIVKGEQVLEPGLPESFNVLIRELQALCLDIKLEENTEEESTFN
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgactcaggttttttcacctaacgaatggtttcgcaagaccttttcaaatactccagca
gtattagataccccgccattaatgaagttacaggtaaactcttacgaagattttcttcaa
aaagacgttccacctgcaaagagaattgaccttggtcttcaacaagttttcaagtcagtt
tttccaatttacgactttaacaaaactgtttctctagagttcgtttcatactctctagaa
gaacctaaatatacagtaaaagaatgccgtcaaagaggtctttcatacgaagctcctctt
aaagtagttgttcgccttgttttcttcgacgtaagcgttgacagagacggagctgagcaa
agaactgtttcttcggtaaaagaacaagaagtttacctaggaaacattccactaatggcc
gaaacagggtcatttgtttacaacggaactgagagagtaatcgtatctcagctacacaga
tctccagggatcattttcgaacacgacaacggaaaaaaacactcttctggaaaacttcta
tattcagcaagaatcattcctcacagaggttcttggctagatttcgaattcgaccacaag
aacattctattcgctcgtatcgatagaaagagaaagcttcacgcttctgtagttcttaag
gcgatgggatactctacatctgaacttctaaaagagttctaccagatggaaacaatctca
ttcaacaaagatggttcatactctagaaaactagacttcaacctacttgttgggacaaga
gcaaacgctgacattcttgataaatcaggaaacgcgattgttaaaaaaggtaaaaaatat
acaaaagcttctgtaaagaagatggaagattcaaaaatcactgaacttccagctgagctt
gaagaagttgttggtaaagtattagcagaagatatcttcaacgaaaaaacaggtgaagta
atctgtcttgctaacgaagctctttctgaagcaaaaatccacgatttagttaaagctggt
gtaaaagaagttaatgttctttacatcgacatgatcaacttcggggaccaaatcagaaac
actcttcttatcgataaaacagaaacgaaagaagatgctctaattaaaattttcgaaaga
ttaagaccaggtgaacctccaacggttgaagctgcgtctcaactttttgaaaaccttttc
ttcaataaagaaaaatatgacctgtcgaaagttggtcgtatgaaaatcaactacaaattc
ggaatgaacattccagtagaagaaacagttcttacaagaagagatatcctaactactgtt
caatacctggtagaacttaacaacggtaaagggaaagtcgatgatatcgatcaccttggt
aaccgtcgtgtaagagctgtaggtgaactactagaaaaccaattcagagttggtctagta
agaatggaaagagcggttaaagaaagaatggcaattcaagaaattgaaacaatgatgcca
tacgatctagttaaccaaaaaccagtagctgctgctgtaaaagaatttttcggttcttct
cagctttctcagttcatggatcaaacaaacccactttctgaagtaactcacaagagaaga
ctttcagctcttgggccagggggtctaactcgtgagcgcgctggtttcgaagtacgtgac
gtacaccctactcactacggaagaatgtgtccggtagaaacaccggaaggaccaaacatc
ggtctaatcacatctcttgctacatacgctcgcgtttctgagtatggtttcattgaaact
ccataccaagtagtaaacgaagacagaacgatttcagctccaaaatacttctcggctttc
gaagaagaaggaaaagttattgctcagcttgaagctaagtacgttgacggtaaaaaaatc
gttggtgatgctatcgctgctcgttcagctggtgactttactgtagtaggtgcaaacgaa
gttcagttaatggacgtttctccaactcagatgatctcgattgctacatcacttattcca
ttccttgagcacgacgatgccaaccgtgcgctaatgggatcgaacatgatgagacaggca
gtaccagttgttagaactgatgctcctattgttggtactggtgttgagcaaattatcgct
cgtgactctggtgcaatcgtttatgcaaaagaaggtggacgtgtaatcttcgttgactct
aacagaatcgttatccaaagagataacttctctgaaggtgagtctggagtagacgtttat
aaacttacaaaataccaacgtactaaccaaaatacttgtaacaaccaaaaagccctagtt
aaagaaggggacaaggttctaaaaggaatggttattgctgacggtccagctactcagctg
ggagaccttgcccttggacaaaacgttctagtagcgttcatgccatggggtggatataac
tacgaggactcgatcctaatcaacgaaaacattcttgcaagagacgtgtttacatctgtt
cacatcgaaagctttgaaatcgaagctcgtgatacaaaattaggtaaagaagaaatcact
cgcgatattccaaacgtttctgaagaggccctaaaagaccttgatgaagctggtattatt
cgcgttggtgcgatcattaagccaggggatatccttgttggtaagatcactccaaaaggt
gagtctcaactttctccagaagaaaaacttcttaaagctatcttcggggataaagctggg
gacgtaaaagatacatcacttcgcgtaccttcatcagttcgcggaactgtaatcgacgct
aaagtttacactcgcgaaggtgttgaactggacgctcgttcaaaagaaatcatcgaccac
gaaacgacactaatccgtcgtgacgaaagaatcgagattaaagctatccaaacatcagca
atccaaaagatcgctgaaatgttcaaaggggcgaagacgacagataaacttatctcagaa
gacgggacaactgaacttcttggaaaaggtgtagctgttacaggtgaaatcctggcttca
attcctttcgaactaatcggttacttacctctagaagctgctcttgaagaaaaactttct
gagtacttcgctgacgtaagaaacagaatcactagagttcgtcaaaaagctaacgatgaa
atcgcgaaactacacaaaggtgacgagttacctcctggagtaatcaagaaggtaatggtt
tacgtagcgattaagagaaagcttcagcctggtgataaaatggccggccgtcacggaaac
aaaggggttatctctaatgttgttaccgcagaagatatgccataccttgcagatggaact
ccagttgaaatcgttcttaacccactaggggtaccttcacgtatgaacatcggtcagctt
cttgagctacaccttggatgggcaggacgtggtcttggtgaaaaaattaagacgatgatg
gaagaaaaagcaaaagttaatgagctgaaagatttcatctttaaaatctacaaaactaaa
gaagtagaagcttggttaaaatcagcttctgacgaaagagttattgaagtagctgaacaa
ctttcaacaggtgttcgtttctctacaagtgtattcgatggtgcttctgaagaagatatc
aaagatatgcttgaacttggtgaccttgatagatcagggaagacaacattattcgacgga
aaaactggtgacgtattctcggaagacgtaacagttggtgcgatgtacatgttaaaactt
caccaccttgttgatgaaaagatccacgctcgttctactggaccatactctctagtaact
cagcagccacttggtggtaaggctcagttcggggggcaacgtcttggagagatggaagtt
tgggcacttgaagcatacggagctgcttacacgttacaagaattcttaactgtaaaatct
gatgacgttatcggacgtacaagaatgtatgaatcgatcgtaaaaggtgagcaggttctt
gaaccaggattacctgagtcgtttaacgttctaatcagagagcttcaagctctatgtcta
gacattaaactagaagagaacacagaagaagaaagcacttttaactaa
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