Bemisia tabaci (sweet potato whitefly): 109037703
Help
Entry
109037703 CDS
T06019
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
btab
Bemisia tabaci (sweet potato whitefly)
Pathway
btab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
109037703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btab03019
]
109037703
Messenger RNA biogenesis [BR:
btab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
109037703
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
109037703
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
109037703
NCBI-ProteinID:
XP_018908037
UniProt:
A0A9P0A325
LinkDB
All DBs
Position
Unknown
AA seq
2394 aa
AA seq
DB search
MNLDSLYFSLSQIKYLIANLNKKNYKLSVQEINHLVASHGLEADRHLFRSLFSFVDLSSD
PNKSVPTYKDSLQLQLLSQECSALLSKPALVSVLCFAFDQPLNRNKALKPSGQLFPQLSK
VLKLTPVEEVVFALTLLNSSNQETVFHATQFVKLKLPNLLRSYINSADSNRSSGDGGLSD
ATPEVLHLILSNLFSTPDDYFGVSGETKEVLVKNLRRDFPRELVPIVLAPLIYPNSTDLL
MDKINQEPTSLTNAMLENSLADTMLEVGYSWTENLEGCRERLSSMAGEIKPGVVARVLGM
MARSHTGLPSSLWPSETDKPDQPPLNTWNVDVFVQALKEVAPNLLWPEVIRELDYPDFLI
KDRRGLSLVITALRLGLQSQGFPLERFPVELFYRPWKYAECQFSLLKQILKNSDVFCFAD
YPSRTVPIESLKSPPESDNKEIASWCCVDLVETILQLAERGLFNQVQDLLKMPMQICPDI
LTLAILHGNLPITPFRQELLSNLMPIFFSNHPNSAMILHHAWHSQSMSVKQIIMHAMADW
YLRGDHDQARLSRILDVAQDLKALSLLLNAQSFPFVIDLACLASRREYLKLEKWLNDKIR
EHGETFLTACVNFLQRKVAFIFGGPLKDEAPKSAQLPHETLSTIITTLQKYAGTVSQDLS
DAIMQIVSNSAMLLCKPRQPPPGVIRSHQQAFTQGALFQATPPESIASLSSSLAGISLSA
PPSSTAFSLPGALGPLVSNPGSPSRLIPPSQNSPYLPHLPQLSGPVGTPTPSILPNVGVG
SINRVSTQSTDKTKLSDSTNLYPEISPPVSKDIEDEANSYFQRIYNHPPHPTLSIEEVLE
MLKKFKDSQNPREREVYTCMLRNLFEEYKFFPQYPDKELHITAQLFGGIVEQCLVANYVA
LGLALRVVLDALKKPHGSKMYYFGIVALDRFKSRLKEFQKYCEHISSIPHFNEFPPHLIE
YIEYGKQSEEPPNHPTGPVIPPPLAGLMTTIAAASFKTMTATTTTATITTAASIKAASSS
VLSTRPSIANATNIDTLLVATEKDDKIVAPPETMQDKVAFIFNNLSQLNLQTKCDELHDV
LTEEYWTWMAQYLVMKRASIELNFHVLYSNFLDVFKVPKVNEMVLKETHRNIKVLLRSDK
GIANFSDRSLLKNLGHWLGMLTLGRNKPILQVDLDIKSLLVEAYQKGQQELLYVVPFIAK
ILESCSKSKVFKPPNPWTLDLMNVLAELHQEADLKLNLKFEIEVLCKNLSLDVAELKPGT
YLKDPEVVKRIEQQLSSGPAKKPEPPVPPATMLQTNIPPPTAIPTPVTAEEVVHAQLESA
RAPSVTPLMAPPPVSSPTPMPIMTPPVEPRFNYNSLSVSVSAAIERHCIFNPQLALFQAY
PGLKGMVRQVVERAVQELIHPVMERSIKIAVTTAEIIVKKDFALDPEEARMRAAAHHMVR
NLTGGMVMISCRDQLLLTIVNGLKTALTTALSGATAQQKELIEHTVTVCAQENMELACAI
IQKTAMEKALVQMDKHLTTEYERRKLARNEGRRYCDPQVLTYQAERMPEQIRLKVGGVTN
QQMAVYEEFFRNLPGFQTISDREVSLYVPRPDTMFLLSAYQNNGSSQVVPPMPYNVSDEV
GPVYDKLVSDIDAYVSAVISSQGAMSSCQVSNMHNVLEALMIVRRSREPVSAIQLIQKCV
EGLLDNLAPIPNDQELAIRYRELHLRVLKTLQDQRAFGPQWTSKYVTKCLMECREEFKYN
LEAIDVLVRSHLVNIPQYDLHVAQSMDNGLNYVAVAFAMQLVQLYLVDDRNNGFISDQDL
VNTIEVLIRIAAHSRQPPEGLTTLIEILRSNHDQSLLPERLHAGPTSHIHSGILQVQARD
FEDPPDLYEKTEFLLREWVSIINSPNNKEPPSKAFSMFVHQMNVQGILKTDDLITRFFRL
STSMVVELSYRLLSEQTVTTSGQIRLKIYHTLDAYVKLIAMLVKHSGDTQNTQTKINLLN
KVLGIIAGVLLQDHESHHSDFQQLPYHRIFIMLFLELNSADPVLEAFNFQILTAFCHTLH
ILRPAKSPGFAYSWLELISHRVFIGRLLQITPQQKGWGLYAQLLMDLFKFLAPFLRNAEL
AKPVTFMYKGTLRVLLILLHDFPEFLCDYHYGFCDVVPPNCIQMRNLILSAFPRNMRLPD
PFTPNLKVDMLQEIAHAPRVSPNFASMIQPLTFKKDLDSYLKARAPVTFLSELRSNLQVS
NEPGVRYNISLLNALVLYVGTQAISFIRGKGLSPNMSTIAHSAHMDIFQNLAVDLDTEGR
YLFLNAIANQLRYPNSHTHYFSCTLLYLFHEANTEAIQEQITRVLLERLIVNRPHPWGLL
ITFIEMIKNPTYKFWNHEFVHCAPEIEKLFESVARSCMVQKAAGPERENEMPEM
NT seq
7185 nt
NT seq
+upstream
nt +downstream
nt
atgaacctggactcattatatttctctttgtcacagataaaatatcttatcgccaacttg
aacaagaaaaactataagcttagcgtccaagaaatcaaccatttggttgcgagccacgga
ctagaagccgacagacatttatttcggagtttgttctcctttgtcgatctaagctcggac
ccaaataaaagtgtccccacttacaaggactctctgcagctccaattactatcgcaagag
tgctctgcgttactgtcaaaaccagctcttgtctcagtgctctgtttcgcgtttgaccag
cctctcaatcgcaacaaggccttgaaaccatccggccagctttttcctcagctgagtaag
gtactgaaactcacacctgttgaagaagtggtttttgcgttaacgcttttgaactcttcc
aatcaagagactgtgtttcatgctactcagtttgtcaaattgaagttaccgaacttgttg
cgatcttacatcaactcagccgattcaaaccgaagctcgggggacggtggattgagtgac
gcaactccggaagtccttcatcttatactgagcaaccttttctccactcctgacgattat
tttggcgtgagtggtgagaccaaagaagttctggttaaaaatttacgccgtgactttcct
cgtgagctggtgcccatcgtgcttgctccgttgatctacccaaattccacagatttgctt
atggataaaattaatcaagagccgacctccttaaccaatgcaatgttggaaaattcgtta
gcagatacaatgctggaggtgggttacagctggacagaaaatctagaaggatgtcgagaa
aggctgtccagcatggctggcgaaatcaaacctggtgtcgtcgcgagggttctgggtatg
atggcgagatcgcatacaggactgccatcatctctctggccctcggaaacagacaagcct
gaccaacctccactgaacacatggaatgtcgatgtctttgtccaagccctcaaagaagtt
gcccccaatttgctatggcctgaagttatacgagaactagactacccagattttctcatc
aaggataggagaggcctcagtctcgtcattacagcccttaggttaggattacagtctcaa
ggatttcccctcgaaaggtttcctgttgagctgttctatcggccgtggaagtatgctgaa
tgccagttttctctcctgaaacaaattctcaaaaactcagatgtgttctgttttgctgac
tacccgtcacggacagtacccattgaatctctgaagtctcctcctgaaagtgacaacaaa
gaaattgcctcttggtgctgtgtggatttagtagaaacaattttacaactcgctgaaaga
ggtctgttcaatcaagtgcaagacctcctcaagatgccgatgcaaatctgtccagacatt
ttaaccctagcaatcctacatggaaacctacccatcaccccgttccggcaagagcttttg
tcaaatctcatgccaatattcttcagcaaccatcctaattctgcgatgatcctgcatcat
gcgtggcattctcagagtatgtctgtaaaacaaatcatcatgcatgcaatggctgactgg
tacttacggggagatcatgaccaggctcggctttctagaatattggacgtggctcaggat
ttaaaggcattatctctccttctaaacgcacaatcgtttccttttgtgattgatctggcc
tgcttagcatctcgcagagagtacctcaaattagaaaagtggttgaacgataaaatcagg
gagcatggagaaacatttttgactgcctgcgtgaacttcttgcagaggaaggtagctttt
atttttggaggacctctgaaggatgaagctccgaagtctgcccagttacctcatgaaacg
ctaagcaccatcataacaacactacaaaaatacgcagggactgtttcgcaagatctctcc
gacgcgatcatgcagattgtttccaactcagcgatgttgctctgcaagccaaggcagcct
ccacctggagtaatcagatctcatcaacaagctttcacgcagggtgcacttttccaagcc
acccctccagaatcgatcgcctcccttagttcctctttagcaggcatcagcctctcagct
cctccatctagtactgcgtttagtttgccaggtgcactaggaccattagtatcgaaccca
ggatccccatcccggctgataccaccctctcaaaactcgccgtaccttccccatctccca
caactatctggaccagtagggacaccaacaccgtcaatattgcccaatgtaggagttgga
agcataaatagggtcagcactcaatctaccgacaaaaccaagctgagtgattcaacaaat
ttatacccagaaatcagtcctcccgtctcaaaagatatagaagatgaagccaacagctat
ttccaaagaatttacaatcatccaccgcacccaactctttcgattgaagaagttctcgaa
atgctcaagaaattcaaagattctcaaaaccctcgagaaagggaagtctacacgtgtatg
ttgcgcaacctgtttgaagagtacaaattcttcccgcagtacccggacaaagaacttcac
atcaccgctcaattgttcggaggcattgttgaacaatgtttagttgcgaactacgttgct
cttgggcttgctcttagagttgttttagacgctctgaagaaaccgcacggaagcaagatg
tattatttcggaatagtagcccttgaccgatttaagtctcgtctgaaagaattccagaaa
tattgcgagcatatttctagcatacctcacttcaatgaatttcctccacatctgatagag
tacattgagtatggcaaacagtcggaagaaccgccgaaccatccaaccggaccagtgata
ccgccgcctcttgccgggttgatgacaaccattgctgcagcatctttcaaaacgatgaca
gccacgacaaccactgccactatcacaactgctgcatccatcaaagctgccagctcttca
gtgctttcaacaagaccatcaatcgcaaatgccaccaacattgatacacttctagtcgca
acagaaaaagacgacaaaatcgttgctcctcccgaaacaatgcaagacaaagtagccttc
attttcaataacttaagtcagctgaacctgcagacaaagtgtgatgaactgcacgatgtt
cttacggaagaatattggacgtggatggcgcagtacctagtcatgaagcgtgctagtatt
gagttgaactttcatgtactgtattccaatttcttggatgtttttaaggtgcccaaagtc
aatgaaatggtgctcaaggaaacccatcgaaacattaaagttttactgcgaagtgacaaa
ggtattgcaaacttttcagatcgttctctactgaaaaatcttggccactggctaggtatg
ctgaccctgggtcgtaacaaacccatccttcaagttgatctagacatcaagtctcttctc
gtcgaggcataccagaaaggacagcaagaattgctttatgttgtcccgttcatagcaaaa
atcctcgagtcttgcagtaaaagcaaagttttcaagcctcctaatccgtggaccttagac
ctgatgaacgtcctagctgaacttcaccaagaggctgacctcaaattgaatctcaagttt
gaaatagaagtcttatgcaaaaacctgtcccttgatgtggcggaattgaaacctggaact
tatttgaaagacccagaggttgtcaaacggatcgaacagcaactgtcctccggcccagca
aagaaaccagagccacctgttcctccggccaccatgttgcaaaccaacatacctcctcca
acagcaatacctacaccagtaactgcagaagaagttgtgcacgcacagctagagtcagcg
agagccccctctgtcacccctctcatggccccaccgcctgtttcctcgcccactccgatg
cccataatgactccacctgtcgagccaagattcaactacaacagcttgagcgtctccgta
tctgcagccattgaaagacattgcatcttcaatcctcaactagcgttattccaagcttat
ccaggcctgaaaggaatggtgcggcaggttgtagaaagagctgtgcaggaactcattcat
ccggtcatggaacgatctatcaaaatagctgtgacaaccgcagagataatcgttaagaag
gatttcgccttggatccggaagaagcacgaatgcgagccgcagcccatcatatggtgaga
aacctaaccggtggaatggttatgatttcatgccgtgatcaacttctactgaccattgtc
aatggcctcaaaaccgctcttaccacggctttatctggtgctactgctcagcagaaagaa
ctcatcgaacacaccgtcactgtctgcgctcaggaaaacatggaattggcttgtgctatt
attcaaaaaacagcaatggaaaaagccctagttcagatggacaaacatctaactacagag
tatgaaaggcggaaacttgccagaaatgaaggccgccgctattgtgaccctcaagtcttg
acttatcaagcagaacgcatgcctgaacaaattagactcaaagttggtggagtgacaaac
caacaaatggctgtgtatgaggaattcttccgcaatttacctggtttccaaaccatctca
gaccgtgaagtgtcattatatgtaccaagaccagacactatgtttttactctctgcctat
cagaacaatggatcatcacaagttgtaccaccaatgccctacaatgtgtcggatgaagta
ggccctgtctatgataagcttgttagcgacatagatgcctacgtctccgctgttataagc
tcgcaaggagctatgtcaagctgtcaggttagcaatatgcacaacgtcctggaagccttg
atgattgtccgccgctcacgtgaacctgtctctgccattcagttgattcaaaaatgcgtt
gaagggctccttgataaccttgctcccatccccaacgaccaagagcttgccattcgctac
cgtgaactgcacttgcgagtcctcaaaactctgcaagatcaacgtgcatttggacctcag
tggacaagcaagtatgttacgaagtgtctcatggaatgccgtgaagaattcaagtacaac
cttgaagctattgatgttttggtgcgctctcatcttgtcaacatcccccagtatgacttg
catgtggcacagtcaatggacaatggcctcaactacgtggctgttgcctttgcaatgcag
ttggtccaactgtatcttgtggatgaccgaaataacggctttattagcgaccaggactta
gtcaacacgattgaggttctcatacgaattgcagctcattccaggcagccaccagaagga
ctcaccactctaattgaaattctgcgctcgaatcatgatcaatcacttctgccggagaga
cttcatgcagggccgacatctcatattcactcaggcattttgcaagttcaggcccgtgac
ttcgaagacccaccggacctgtatgaaaaaaccgaattcttactcagagagtgggtatca
atcatcaatagccccaataacaaagagccaccgtcaaaggcattcagcatgttcgttcac
caaatgaatgttcaaggtatcctaaaaacagacgatctgatcacaagatttttcagatta
agcacatcgatggtcgttgagttgagctaccgtctgctgtctgaacaaaccgttacaacc
tctggtcagattcgtctcaaaatctatcacacccttgatgcatatgttaagctaatcgcc
atgctcgtcaaacactcaggtgacacccagaatacacaaaccaaaattaaccttctgaac
aaggtcttaggtatcattgcaggagttttactgcaagaccacgagtcgcatcattctgat
ttccaacagctcccttaccatcgaatcttcatcatgcttttcttagaattgaactctgct
gacccagtattggaagcgttcaacttccaaatcctaacagcattctgtcacactttgcac
atattacgccctgccaaatcaccaggctttgcatactcatggctggaacttatttcccac
cgtgtcttcatcgggcgtttgctgcagataacgccgcagcagaaaggctggggtctctat
gctcaacttctcatggatctatttaagtttttagcgccattcctgcgtaatgccgagctt
gccaaacctgtgacattcatgtacaaaggcacactgcgtgtgctgctcatcttgcttcat
gatttcccagaattcttgtgcgactatcattacggtttctgcgatgttgtaccccccaac
tgtatccagatgcgaaacttgatattgtctgctttccctcgcaacatgagactccctgat
ccgtttacacctaacctaaaggtagacatgctccaagagattgctcatgcccctcgcgta
tcaccaaactttgccagcatgattcaaccattaactttcaagaaagaccttgactcttac
ctgaaagcacgcgcccctgtcaccttcttgtcggaacttcgtagcaacttgcaagtttca
aatgaaccaggtgttcgctacaacatctcactattgaatgcgcttgttttgtatgttggc
acccaagcaatttcgttcatccgtggtaaaggcctcagcccaaacatgtcaacgatagct
cactcagctcacatggacatcttccaaaacttggctgttgatctagacacagaaggcagg
tatttattcctgaacgcaattgcaaaccagttgaggtatccaaatagtcacacacactat
ttcagctgcacgttgctgtacttattccacgaagcaaacacagaagcaatccaggaacag
atcacacgcgtactgctggaacggctcatcgtgaacagacctcatccatggggtctattg
ataacattcatcgaaatgattaaaaacccaacatacaagttttggaatcatgagtttgtc
cattgcgcacctgaaatcgagaaactttttgaatctgtcgctcgatcgtgcatggtccag
aaagctgcaggaccggaacgagaaaacgagatgcctgaaatgtga
DBGET
integrated database retrieval system
