Budorcas taxicolor (takin): 128062901
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Entry
128062901 CDS
T08909
Symbol
PARN
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
btax
Budorcas taxicolor (takin)
Pathway
btax03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
btax00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
128062901 (PARN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
btax03019
]
128062901 (PARN)
Enzymes [BR:
btax01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
128062901 (PARN)
Messenger RNA biogenesis [BR:
btax03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
128062901 (PARN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
R3H
RRM_Thc1
NCBP3
RRM_1
T6PP_C
Motif
Other DBs
NCBI-GeneID:
128062901
NCBI-ProteinID:
XP_052511322
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All DBs
Position
2:29365468..29565656
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AA seq
638 aa
AA seq
DB search
MEIIRSNFKSNLHKVYQAIEEADFFAIDGEFSGISDGPSVTALTNGFDTPEERYQKLKKH
SMDFLLFQFGLCTFKYDYTDSKYITKSFNFYVFPKPFNRSSPDVKFVCQSSSIDFLASQG
FDFNKVFRNGIPYLNQEEERQLREQYDEKRSQSNGAGALSYTSPNTSKCPVTIPDDQKKF
IDQVVEKIEDLLQSEENKNLDLEPCTGFQRKLIYQTLSWKYPKGIHVETLETEKKERYIV
ISKVDEEERKRREQQKHAKEQEELNDAVGFSRVIHAIANSGKLVIGHNMLLDVMHTVHQF
YCPLPADLNEFKEMTTCVFPRLLDTKLMASTQPFKDIINNTSLAELEKRLKEIPFNPPKV
ESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGSFLSPPKSHVSARSKLIEPFFN
KLFLMRVMDIPYLNLEGPDLQPKRDHVLHVTFPKEWKTSDLYQLFSAFGNIQISWIDDTS
AFVSLSQPEQVPIAVNTSKYAESYRIQTYADYVGKKREEKQMKRKWTEDSWKEVEPKRLN
TQCVSYGLQNHHYHANSLTATSTVGKRNLSPSRAEAGLEARASGEISDTELEQTDPCAES
LSEGRKKAKKLKRMKKDLSPTGSISDSSAKLFEVPDTW
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggagataatcaggagcaattttaagagtaatcttcacaaagtgtaccaggccatagag
gaggccgacttcttcgccatcgatggggagttttcaggaatcagcgatggaccttcggtc
accgcattaacaaatggttttgacactccagaagaaaggtatcagaagcttaaaaagcat
tccatggactttttgctgtttcagtttggcctttgcacttttaagtatgactacacagat
tcaaagtatataacaaagtcttttaacttctatgttttcccgaaacccttcaatagatcc
tcaccagatgtcaaatttgtttgtcagagctcaagcattgactttctagcaagccaagga
tttgattttaataaagtttttcgcaacggaattccgtacttaaaccaggaagaagaaaga
cagttaagagagcagtatgatgagaagcgttcgcagtccaatggtgcaggtgctctgtcc
tacacgtctcctaacacttcaaagtgtcccgtgactattcctgacgatcagaagaagttc
attgaccaagtggtagagaaaatagaagatttattacaaagtgaagaaaacaagaacttg
gatttagagccatgtactgggttccaaagaaaactgatttatcagactttgagctggaag
tatcccaaaggcattcatgttgagactttagaaaccgaaaagaaagagcgatatattgtt
atcagcaaagtagatgaagaagaacgcaaaagaagagagcaacagaaacatgctaaggaa
caggaagaactgaatgatgctgtgggattttctagagtcattcatgccattgctaattcg
gggaagcttgtcattggacacaacatgctcttggacgtcatgcatacggttcatcagttc
tactgccctctgcctgcggacttaaatgaatttaaggagatgacaacatgtgttttcccc
aggctcttggatacaaaattgatggccagcacacaaccttttaaggatatcattaacaac
acatcccttgcagaattggaaaagcggttaaaagagatacctttcaaccctcctaaagtt
gaaagtgcagaaggctttccaagttatgacacggcttctgaacagctccacgaggcaggc
tatgatgcttatatcacaggactgtgtttcatctccatggccaactacctaggttctttt
cttagtcctccaaagagtcatgtgtctgccagatcaaaactcatcgaacctttttttaac
aagttatttcttatgagagtcatggatatcccgtatctaaacttggaaggaccagacttg
cagcctaaacgtgatcacgtcctccatgtgacattccccaaagaatggaaaaccagtgac
ctttaccagcttttcagtgcctttggtaacattcagatatcttggattgatgacacatca
gcatttgtttctctcagccaacctgaacaagtgccaattgctgtcaataccagcaagtat
gcagagagctatcgcatccagacctatgctgactatgtcgggaaaaagcgagaggagaag
cagatgaagagaaagtggacagaagatagttggaaggaggttgagccaaagcggctaaac
acgcagtgcgtctcctacggtttgcagaatcaccattaccacgccaacagtctcacagcc
accagcacagtaggaaagagaaacctgagtcccagtcgagcagaagctggcctggaggcc
cgagcatcgggggagatttctgacactgagcttgagcagacagatccctgtgcagaatcc
ctctcagagggaaggaaaaaggccaagaaactaaaaaggatgaagaaggacctttctccg
acaggaagcatctcggacagctcggccaagctcttcgaagtccccgacacgtggtaa
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