Bombus terrestris (buff-tailed bumblebee): 100647474
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Entry
100647474 CDS
T04364
Name
(RefSeq) exosome component 10
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
bter
Bombus terrestris (buff-tailed bumblebee)
Pathway
bter03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bter00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100647474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bter03019
]
100647474
Messenger RNA biogenesis [BR:
bter03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
100647474
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
100647474
NCBI-ProteinID:
XP_012170136
UniProt:
A0A9B2JLL3
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Position
12:complement(12020507..12024113)
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AA seq
870 aa
AA seq
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MDTTEDRSGECQALENENQQVNQLIPGYENFHDYVQEAFDAIKLGIKCANNLPTGSNFNY
YSCFPSFLKVKDENTKLLTGVMQHLLGLAGVKGNISNLDIEEKFDLLLETNDMLLDRANA
LMDKECGITKNTEVELLVSSTKGHPDGINGSWNKQAYRSQATENTHSVSLLAGKNIQRPQ
LMFKDKIDNSSKPWCPRIKDKPNSLKPLAIYLEEGENGEIFSHPYEYELDMFVPPNDQLK
KSVPRKYKPLEETLLVMIKDPSDIELLIEDLKRYKEIAVDLEHHSYRSFQGITCLMQIST
GDTDYLIDTLSLRSELHELNEIFTKSTILKVFHGADLDIQWLQRDLSLYVVNMFDTHQAA
KQLNLPYLSLAYLLKHYCNVDPDKHFQMADWRIRPLPEKLIKYAREDTHYLLYIKDLLRN
ALIDVANGQINILKAVYDRSTEICKNTYIKPVWTEESCMIMYRKSQKMFNNKQLYALKEL
HKWRDQTARGEDDSIGYVLPNHMLLNIAETLPREMQGILACCDSIPPLVRQNLLKLHKII
LKAREQPLIKPVIEDDIRQRLTQRNPDNNLKTWMYSPHDIPSNMEARADLPCLLDENNII
EEHISNIAMKHAVTVFDSPTPSEDEEAETDEQESNRKKRFLFVSPFERYKRVIPMIAEQE
AQEREKLRQEEENRLNEVKSKEDEIAESKNRIYEHFKRVSQMATEGSVSVLPKKPSQTPL
SQMSGRKRKRDSNINKQDEVQDKKIKDDLSNPTPMLETKTTQYAKQESDEIELLSEEQNV
PESITKSRKPASSNETINPLRTRKKGEKDCIIKELKKKGMMPSKTFDYKVVDFSTFQGGS
TNVSNQVNFEQTMKRKREKTRKRKKQKLNI
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggatactacggaagatcgcagtggcgaatgccaagcattagaaaatgaaaatcaacaa
gttaaccaattaatacctggatatgagaattttcacgattatgttcaggaagcattcgat
gccataaaacttggaattaaatgtgctaataatttaccaactggatcaaatttcaattat
tactcgtgttttcccagtttcctcaaagtcaaggatgaaaatacaaaattgttaacgggc
gttatgcagcatttattggggttagctggcgtaaagggcaatatatcgaatcttgatatc
gaagagaagtttgatcttctgttagaaacgaacgacatgcttttggaccgagccaatgcc
ttaatggacaaagaatgtggcatcactaagaataccgaagtagaattgctggtgtcaagc
acaaagggccatccagatggaattaacggttcatggaacaaacaagcttatcgatcgcaa
gccacggagaatactcattctgttagtttattagccggtaaaaatattcaaaggccgcaa
ctaatgttcaaagacaaaattgacaatagctctaaaccctggtgtcctagaattaaagac
aaacccaattctttgaaacctttggctatttatttggaagaaggtgaaaatggtgaaatc
tttagtcatccttatgaatacgagctggatatgtttgtccctcctaatgatcagttgaaa
aaatcggtaccaagaaagtataaacccctggaagaaacgctattggtaatgatcaaagat
ccgtcggatattgagttattgatagaagatctaaaaaggtataaagaaattgctgtagat
ttggaacatcattcgtatagaagctttcaaggaatcacctgtttgatgcagatctcaaca
ggagatacagattacctgattgatactctgtcgttacgatctgaattacacgagctaaac
gaaatttttaccaagtctacgatactaaaagtttttcacggagcagatttggacattcag
tggcttcagagagacttatctctatacgtagtaaatatgtttgatacgcatcaagcggca
aaacaacttaacctgccgtacttaagtttagcatatttactaaaacattactgtaacgta
gatcctgataaacattttcaaatggcagattggcgcataaggcctttaccagagaaactt
ataaaatacgccagggaggatacgcattatttactgtacataaaggatttattaaggaat
gctttaatagacgttgctaacggacaaatcaatattttgaaagctgtatacgacagaagt
acagagatttgtaaaaacacttatataaaaccagtttggacggaggaaagttgcatgatt
atgtatagaaagagtcagaaaatgtttaataataaacagctttatgctctgaaagaattg
cataaatggagagatcaaactgccagaggggaagatgatagtattggttacgtattgcca
aatcatatgttattgaacatagctgaaacattacctcgtgaaatgcaaggaattttggca
tgctgcgactctattcctcctttggttagacagaatttattaaaactacataaaataata
ttgaaggctagggaacagccacttattaagccagtcattgaagacgatatcaggcaaaga
ttgacgcaaagaaatcctgataacaatttaaaaacgtggatgtattcacctcatgatatt
cccagtaatatggaagcacgagctgacttaccatgtttgttagatgaaaacaacataata
gaagagcacatttcgaatattgcgatgaagcatgcagtgactgtgtttgacagcccaact
ccgtctgaggatgaggaagcagaaacggacgaacaggaaagtaatagaaaaaagaggttt
ctcttcgtaagtccgtttgaacgatacaaacgggttatacctatgatagcggaacaagaa
gcacaggaaagagaaaagctaagacaagaagaagaaaatcgtttgaatgaagtaaaaagt
aaagaagatgaaatagcagagagtaaaaacagaatttacgaacactttaaacgtgtttct
caaatggcgacagaaggaagtgtgtcagttttaccaaaaaaaccatctcaaactccgctg
agtcaaatgtcgggtcgtaaaagaaaacgagattcaaatattaacaaacaagatgaagta
caagacaaaaaaattaaagatgatttatcaaacccaactccaatgttagaaaccaaaact
actcaatatgcgaaacaagaatcggatgaaattgaacttttaagcgaagagcaaaatgta
ccagaaagtattacaaaaagtcggaaaccagcatcgagtaatgaaactattaatccgtta
cgcacaagaaaaaaaggagaaaaggattgtataattaaggaattgaaaaagaaaggtatg
atgccatcaaaaacattcgactataaagtcgtagattttagtacttttcaaggaggtagt
acaaacgtatccaaccaagtaaactttgaacaaacaatgaagaggaaaagagaaaagaca
cgaaaaaggaagaagcaaaaattgaatatataa
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